miRNA display CGI


Results 1 - 20 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19001 3' -63.1 NC_004684.1 + 965 0.7 0.198575
Target:  5'- gCGGGUCauuGGCGaCUCCGGgGCguucUCGGCCa -3'
miRNA:   3'- -GCCUAG---UCGCgGAGGUCgCG----GGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 1086 0.66 0.375527
Target:  5'- aCGuGAUCGGUGaCCaggCC-GCGaCCCGGCg -3'
miRNA:   3'- -GC-CUAGUCGC-GGa--GGuCGC-GGGCCGg -5'
19001 3' -63.1 NC_004684.1 + 1181 0.66 0.412848
Target:  5'- cCGGGUC-GCgGCCuggucaccgaucacgUCCAGCGCcgCCaGCCa -3'
miRNA:   3'- -GCCUAGuCG-CGG---------------AGGUCGCG--GGcCGG- -5'
19001 3' -63.1 NC_004684.1 + 1227 0.74 0.115803
Target:  5'- uCGGccUCGGCgGCCUggUCGGuCGCCCGGCCc -3'
miRNA:   3'- -GCCu-AGUCG-CGGA--GGUC-GCGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 2102 0.74 0.118882
Target:  5'- uGGucaacGUCGGgGCggUCCAGCGCCCaGGCCa -3'
miRNA:   3'- gCC-----UAGUCgCGg-AGGUCGCGGG-CCGG- -5'
19001 3' -63.1 NC_004684.1 + 2616 0.67 0.359334
Target:  5'- aGGugcgCAGCGUC-CgCAGUGCCgGGCg -3'
miRNA:   3'- gCCua--GUCGCGGaG-GUCGCGGgCCGg -5'
19001 3' -63.1 NC_004684.1 + 2918 0.71 0.184176
Target:  5'- uGGAaguauuUCgaGGUGCCUCCGGUGCCgagcaccgaGGCCa -3'
miRNA:   3'- gCCU------AG--UCGCGGAGGUCGCGGg--------CCGG- -5'
19001 3' -63.1 NC_004684.1 + 3364 0.71 0.184176
Target:  5'- cCGGcagCAGUGCgUCCAcGaUGUCCGGCCa -3'
miRNA:   3'- -GCCua-GUCGCGgAGGU-C-GCGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 3697 0.68 0.299546
Target:  5'- aGGAgaucgcCAGCGCCgCC-GCGCU-GGCCg -3'
miRNA:   3'- gCCUa-----GUCGCGGaGGuCGCGGgCCGG- -5'
19001 3' -63.1 NC_004684.1 + 3819 0.66 0.375527
Target:  5'- aGGAUCugcugGGCGCgUUCGGCGUgCCGaCCg -3'
miRNA:   3'- gCCUAG-----UCGCGgAGGUCGCG-GGCcGG- -5'
19001 3' -63.1 NC_004684.1 + 4435 0.7 0.217674
Target:  5'- uCGGAgaccUCAGCggugggugucauagGCaCUCCAguGCGCCCGGUg -3'
miRNA:   3'- -GCCU----AGUCG--------------CG-GAGGU--CGCGGGCCGg -5'
19001 3' -63.1 NC_004684.1 + 5142 0.68 0.285855
Target:  5'- aGGAUCgugggAGCGCCgggugCCAGaCGCguggUGGCCa -3'
miRNA:   3'- gCCUAG-----UCGCGGa----GGUC-GCGg---GCCGG- -5'
19001 3' -63.1 NC_004684.1 + 5466 0.7 0.213944
Target:  5'- aGGAUCGGCG-UUCCGGUGagacgCCGGUCc -3'
miRNA:   3'- gCCUAGUCGCgGAGGUCGCg----GGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 5986 0.79 0.052384
Target:  5'- gCGcGAUCAGCGCCgccgCCAcccggucaggcugguGCuGCCCGGCCu -3'
miRNA:   3'- -GC-CUAGUCGCGGa---GGU---------------CG-CGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 6016 0.7 0.213944
Target:  5'- uCGGAcgCGGUgGCCUuuaggccgCCAGCGCCucgCGGCCc -3'
miRNA:   3'- -GCCUa-GUCG-CGGA--------GGUCGCGG---GCCGG- -5'
19001 3' -63.1 NC_004684.1 + 6189 0.7 0.224749
Target:  5'- cCGGGcaGGUacaugucgaugGCCUCCGGCGCgaucUCGGCCa -3'
miRNA:   3'- -GCCUagUCG-----------CGGAGGUCGCG----GGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 6423 0.67 0.343635
Target:  5'- uCGGcggCGGCgugaacGCCUUC-GCGCuuGGCCg -3'
miRNA:   3'- -GCCua-GUCG------CGGAGGuCGCGggCCGG- -5'
19001 3' -63.1 NC_004684.1 + 7513 0.76 0.081797
Target:  5'- aCGGGUCAGUGCCUgguagcgCCAGCGCCgGaaCCg -3'
miRNA:   3'- -GCCUAGUCGCGGA-------GGUCGCGGgCc-GG- -5'
19001 3' -63.1 NC_004684.1 + 7601 0.69 0.26625
Target:  5'- uGGGUCAcGCGCgCggcggCCAGCGCguagacaaccagCCaGGCCa -3'
miRNA:   3'- gCCUAGU-CGCG-Ga----GGUCGCG------------GG-CCGG- -5'
19001 3' -63.1 NC_004684.1 + 7671 0.66 0.409361
Target:  5'- cCGGGUugccgcgcacCAGcCGCa-CCAGCGCCacccggGGCCg -3'
miRNA:   3'- -GCCUA----------GUC-GCGgaGGUCGCGGg-----CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.