miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19002 3' -59.6 NC_004684.1 + 16608 1.11 0.000363
Target:  5'- aCCCCAGGACUGCGGCGCAUACGGCACu -3'
miRNA:   3'- -GGGGUCCUGACGCCGCGUAUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 60081 0.81 0.05374
Target:  5'- gUCCAauACUGCGGCGCGUGCGGCAa -3'
miRNA:   3'- gGGGUccUGACGCCGCGUAUGCCGUg -5'
19002 3' -59.6 NC_004684.1 + 37230 0.8 0.063514
Target:  5'- cUCCCAGaACUgGCGGCGCAgugcgcugGCGGCACg -3'
miRNA:   3'- -GGGGUCcUGA-CGCCGCGUa-------UGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 2523 0.79 0.079246
Target:  5'- gCCCGGcACUGCGGaCGC-UGCGGCACc -3'
miRNA:   3'- gGGGUCcUGACGCC-GCGuAUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 64160 0.77 0.116094
Target:  5'- gCCCAGGA-UGCGGCGCAccucuuccaGGCGCa -3'
miRNA:   3'- gGGGUCCUgACGCCGCGUaug------CCGUG- -5'
19002 3' -59.6 NC_004684.1 + 21255 0.75 0.143812
Target:  5'- uCCCCucguGGacaGCUGCGGCGUAUuucGCGuGCGCg -3'
miRNA:   3'- -GGGGu---CC---UGACGCCGCGUA---UGC-CGUG- -5'
19002 3' -59.6 NC_004684.1 + 65425 0.75 0.155685
Target:  5'- gCgCCAGGcGCUGCGcugGCGUGCGGCGCg -3'
miRNA:   3'- -GgGGUCC-UGACGCcg-CGUAUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 57599 0.74 0.172894
Target:  5'- gCCUCGGGAUc-CGGCGCAggcaccugcgUGCGGCGCu -3'
miRNA:   3'- -GGGGUCCUGacGCCGCGU----------AUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 20970 0.73 0.190303
Target:  5'- aCCCGgucGGAgCgGCGGCGCAggucggcccgauccUGCGGCGCa -3'
miRNA:   3'- gGGGU---CCU-GaCGCCGCGU--------------AUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 54589 0.73 0.201886
Target:  5'- uUCCCAGGuACUaucGCGcGCGCGUGC-GCGCg -3'
miRNA:   3'- -GGGGUCC-UGA---CGC-CGCGUAUGcCGUG- -5'
19002 3' -59.6 NC_004684.1 + 23706 0.73 0.205007
Target:  5'- cCUCCAaccuGGGCgGCGGCGCGcucaacaucgcugGCGGCGCa -3'
miRNA:   3'- -GGGGU----CCUGaCGCCGCGUa------------UGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 56942 0.72 0.223489
Target:  5'- gCCCGGGACU--GGUGC--ACGGCGCa -3'
miRNA:   3'- gGGGUCCUGAcgCCGCGuaUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 48025 0.72 0.234422
Target:  5'- gCUCCGGGAaccgcugcgcgauCagGCGGCGCAUGCGGaugGCg -3'
miRNA:   3'- -GGGGUCCU-------------Ga-CGCCGCGUAUGCCg--UG- -5'
19002 3' -59.6 NC_004684.1 + 28714 0.72 0.240955
Target:  5'- gCUCCAGG-CUuucUGGCGCGUcuGCGGCACc -3'
miRNA:   3'- -GGGGUCCuGAc--GCCGCGUA--UGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 59007 0.72 0.240955
Target:  5'- uCCCCGGaGGCgggGUGGgGCGgggACGGCGa -3'
miRNA:   3'- -GGGGUC-CUGa--CGCCgCGUa--UGCCGUg -5'
19002 3' -59.6 NC_004684.1 + 4860 0.72 0.251972
Target:  5'- aCCCCGGaGCcGUGGCGCuugaucaggucGCGGCACu -3'
miRNA:   3'- -GGGGUCcUGaCGCCGCGua---------UGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 19410 0.71 0.265997
Target:  5'- -gCCAcGGCgGCGGCGUAUGCGGCc- -3'
miRNA:   3'- ggGGUcCUGaCGCCGCGUAUGCCGug -5'
19002 3' -59.6 NC_004684.1 + 49493 0.71 0.285441
Target:  5'- gCUCCAGGug-GUGGCGCugaccgaGUACGGCGg -3'
miRNA:   3'- -GGGGUCCugaCGCCGCG-------UAUGCCGUg -5'
19002 3' -59.6 NC_004684.1 + 38136 0.71 0.293104
Target:  5'- gCCUCGGGGgUGguCGGCGCGUACagGGCGu -3'
miRNA:   3'- -GGGGUCCUgAC--GCCGCGUAUG--CCGUg -5'
19002 3' -59.6 NC_004684.1 + 19487 0.7 0.300209
Target:  5'- gCCCCuGGagccagccgcuGCUGUGGUGgG-ACGGCACg -3'
miRNA:   3'- -GGGGuCC-----------UGACGCCGCgUaUGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.