miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19002 3' -59.6 NC_004684.1 + 134 0.7 0.307447
Target:  5'- gCUUAGGACaaUGCcGCGCAUaccacguuGCGGCGCg -3'
miRNA:   3'- gGGGUCCUG--ACGcCGCGUA--------UGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 1098 0.66 0.508841
Target:  5'- -aCCAGGccGCgaccCGGCGCAacUGGCACg -3'
miRNA:   3'- ggGGUCC--UGac--GCCGCGUauGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 1386 0.66 0.549548
Target:  5'- gCUCCGGGugggGCGGCGgCuacCGGUACg -3'
miRNA:   3'- -GGGGUCCuga-CGCCGC-GuauGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 2083 0.67 0.459856
Target:  5'- gCgCCAGcucgcaACUgGUGGCGCAgcacUACGGCGCg -3'
miRNA:   3'- -GgGGUCc-----UGA-CGCCGCGU----AUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 2523 0.79 0.079246
Target:  5'- gCCCGGcACUGCGGaCGC-UGCGGCACc -3'
miRNA:   3'- gGGGUCcUGACGCC-GCGuAUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 2773 0.7 0.337725
Target:  5'- -gCCGGGGaUGCGGUGCc--CGGCGCu -3'
miRNA:   3'- ggGGUCCUgACGCCGCGuauGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 3598 0.7 0.314818
Target:  5'- aCCCguCGGcGAUUGCGGCGUccugGCGGcCACg -3'
miRNA:   3'- -GGG--GUC-CUGACGCCGCGua--UGCC-GUG- -5'
19002 3' -59.6 NC_004684.1 + 4213 0.67 0.498858
Target:  5'- aCCgCCAGccacGACUGCauGCGCcugcGCGGCGCg -3'
miRNA:   3'- -GG-GGUC----CUGACGc-CGCGua--UGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 4860 0.72 0.251972
Target:  5'- aCCCCGGaGCcGUGGCGCuugaucaggucGCGGCACu -3'
miRNA:   3'- -GGGGUCcUGaCGCCGCGua---------UGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 5818 0.67 0.449414
Target:  5'- aCUUguGGAuggcgaacggcauCUGCGGCGCG-AgGGCGCg -3'
miRNA:   3'- -GGGguCCU-------------GACGCCGCGUaUgCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 5894 0.67 0.469458
Target:  5'- aCCgGGuGGCgGCGGCGCugauCGcGCACg -3'
miRNA:   3'- gGGgUC-CUGaCGCCGCGuau-GC-CGUG- -5'
19002 3' -59.6 NC_004684.1 + 7565 0.66 0.528033
Target:  5'- gCCCCGGGuggcgcuGgUGCGGCugGUGcGCGGCAa -3'
miRNA:   3'- -GGGGUCC-------UgACGCCG--CGUaUGCCGUg -5'
19002 3' -59.6 NC_004684.1 + 10428 0.7 0.307447
Target:  5'- uCCCCggcGGGGuCgaugGCGGCcuGCGUuGCGGCGCg -3'
miRNA:   3'- -GGGG---UCCU-Ga---CGCCG--CGUA-UGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 11959 0.68 0.429851
Target:  5'- gCCUGGcacCUGCGGCGCcaccgcgaccgGCGGCACc -3'
miRNA:   3'- gGGGUCcu-GACGCCGCGua---------UGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 12006 0.68 0.395763
Target:  5'- cCCCgCAGGACUucGCGGCG---GCGGUg- -3'
miRNA:   3'- -GGG-GUCCUGA--CGCCGCguaUGCCGug -5'
19002 3' -59.6 NC_004684.1 + 12557 0.66 0.508841
Target:  5'- gCUCCAGGcGCUcGCacgucaGGCGCAgGCGGCu- -3'
miRNA:   3'- -GGGGUCC-UGA-CG------CCGCGUaUGCCGug -5'
19002 3' -59.6 NC_004684.1 + 14165 0.67 0.488964
Target:  5'- cCCCCAGGucgaucacguuCUGCauGGCGCGgaaccaGGUACc -3'
miRNA:   3'- -GGGGUCCu----------GACG--CCGCGUaug---CCGUG- -5'
19002 3' -59.6 NC_004684.1 + 15181 0.7 0.322321
Target:  5'- aCCUGGGACuggUGCuGCGCA-GCGGCAa -3'
miRNA:   3'- gGGGUCCUG---ACGcCGCGUaUGCCGUg -5'
19002 3' -59.6 NC_004684.1 + 15256 0.67 0.459856
Target:  5'- gUCCCAGGuGCgugGCGGCG---GCGGC-Ca -3'
miRNA:   3'- -GGGGUCC-UGa--CGCCGCguaUGCCGuG- -5'
19002 3' -59.6 NC_004684.1 + 15518 0.7 0.329957
Target:  5'- gCCCGGGGCcG-GGCGCuggaGGCGCu -3'
miRNA:   3'- gGGGUCCUGaCgCCGCGuaugCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.