miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19002 3' -59.6 NC_004684.1 + 33472 0.69 0.361821
Target:  5'- gCCUCGGcggcGGCUGCGGUGgAcGCGGCGg -3'
miRNA:   3'- -GGGGUC----CUGACGCCGCgUaUGCCGUg -5'
19002 3' -59.6 NC_004684.1 + 45206 0.7 0.322321
Target:  5'- gCUCCAGcGGCaGCGcGUcCAUGCGGCGCu -3'
miRNA:   3'- -GGGGUC-CUGaCGC-CGcGUAUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 15181 0.7 0.322321
Target:  5'- aCCUGGGACuggUGCuGCGCA-GCGGCAa -3'
miRNA:   3'- gGGGUCCUG---ACGcCGCGUaUGCCGUg -5'
19002 3' -59.6 NC_004684.1 + 53524 0.7 0.322321
Target:  5'- gCCCAGGACgGUGuCGUcgGUGCGGCGu -3'
miRNA:   3'- gGGGUCCUGaCGCcGCG--UAUGCCGUg -5'
19002 3' -59.6 NC_004684.1 + 49705 0.7 0.326886
Target:  5'- -aCCGGGcACgcgcucgGCGGCGCGgcguucaaacucaGCGGCACg -3'
miRNA:   3'- ggGGUCC-UGa------CGCCGCGUa------------UGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 15518 0.7 0.329957
Target:  5'- gCCCGGGGCcG-GGCGCuggaGGCGCu -3'
miRNA:   3'- gGGGUCCUGaCgCCGCGuaugCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 51742 0.69 0.353658
Target:  5'- -gCCAGGAaUGCGGCGUgcuccaGGCGCu -3'
miRNA:   3'- ggGGUCCUgACGCCGCGuaug--CCGUG- -5'
19002 3' -59.6 NC_004684.1 + 46272 0.69 0.353658
Target:  5'- uCCCaCAGGAUcacgucgcgGCGGCcgaGCGcguUGCGGCGCu -3'
miRNA:   3'- -GGG-GUCCUGa--------CGCCG---CGU---AUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 56199 0.69 0.356907
Target:  5'- gCCCGGuggaugagacgcuguGGgaGCGGCGCAUGCaGGCGg -3'
miRNA:   3'- gGGGUC---------------CUgaCGCCGCGUAUG-CCGUg -5'
19002 3' -59.6 NC_004684.1 + 65825 0.7 0.314074
Target:  5'- aCCCGGaGGCaccgGCGGCucacaggugcaccGCAUGCGaGCGCg -3'
miRNA:   3'- gGGGUC-CUGa---CGCCG-------------CGUAUGC-CGUG- -5'
19002 3' -59.6 NC_004684.1 + 51476 0.7 0.300209
Target:  5'- cCCCCAGGAUgGCGaccUGCGgAUGGCACc -3'
miRNA:   3'- -GGGGUCCUGaCGCc--GCGUaUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 19487 0.7 0.300209
Target:  5'- gCCCCuGGagccagccgcuGCUGUGGUGgG-ACGGCACg -3'
miRNA:   3'- -GGGGuCC-----------UGACGCCGCgUaUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 64160 0.77 0.116094
Target:  5'- gCCCAGGA-UGCGGCGCAccucuuccaGGCGCa -3'
miRNA:   3'- gGGGUCCUgACGCCGCGUaug------CCGUG- -5'
19002 3' -59.6 NC_004684.1 + 65425 0.75 0.155685
Target:  5'- gCgCCAGGcGCUGCGcugGCGUGCGGCGCg -3'
miRNA:   3'- -GgGGUCC-UGACGCcg-CGUAUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 20970 0.73 0.190303
Target:  5'- aCCCGgucGGAgCgGCGGCGCAggucggcccgauccUGCGGCGCa -3'
miRNA:   3'- gGGGU---CCU-GaCGCCGCGU--------------AUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 54589 0.73 0.201886
Target:  5'- uUCCCAGGuACUaucGCGcGCGCGUGC-GCGCg -3'
miRNA:   3'- -GGGGUCC-UGA---CGC-CGCGUAUGcCGUG- -5'
19002 3' -59.6 NC_004684.1 + 23706 0.73 0.205007
Target:  5'- cCUCCAaccuGGGCgGCGGCGCGcucaacaucgcugGCGGCGCa -3'
miRNA:   3'- -GGGGU----CCUGaCGCCGCGUa------------UGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 56942 0.72 0.223489
Target:  5'- gCCCGGGACU--GGUGC--ACGGCGCa -3'
miRNA:   3'- gGGGUCCUGAcgCCGCGuaUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 48025 0.72 0.234422
Target:  5'- gCUCCGGGAaccgcugcgcgauCagGCGGCGCAUGCGGaugGCg -3'
miRNA:   3'- -GGGGUCCU-------------Ga-CGCCGCGUAUGCCg--UG- -5'
19002 3' -59.6 NC_004684.1 + 28714 0.72 0.240955
Target:  5'- gCUCCAGG-CUuucUGGCGCGUcuGCGGCACc -3'
miRNA:   3'- -GGGGUCCuGAc--GCCGCGUA--UGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.