miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19003 5' -52.6 NC_004684.1 + 16978 1.1 0.001736
Target:  5'- gUGCGCUUGAAACUCUGCACCACACCGg -3'
miRNA:   3'- -ACGCGAACUUUGAGACGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 8282 0.8 0.199387
Target:  5'- cGCGCUUGAucagCUGCGCCugGCCc -3'
miRNA:   3'- aCGCGAACUuugaGACGUGGugUGGc -5'
19003 5' -52.6 NC_004684.1 + 2714 0.73 0.505381
Target:  5'- gGUGCcgGggGCaagUGCGCCACACCGc -3'
miRNA:   3'- aCGCGaaCuuUGag-ACGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 48629 0.72 0.534215
Target:  5'- gUGCGCcucuucccaggcccaGAuGCgCUGCACCGCGCCGg -3'
miRNA:   3'- -ACGCGaa-------------CUuUGaGACGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 22300 0.72 0.537456
Target:  5'- cGCGCaggGAGGCcacCUGCGCCAguCCGa -3'
miRNA:   3'- aCGCGaa-CUUUGa--GACGUGGUguGGC- -5'
19003 5' -52.6 NC_004684.1 + 48468 0.72 0.559226
Target:  5'- gGUGCU-GA---UCgUGCACCACACCGg -3'
miRNA:   3'- aCGCGAaCUuugAG-ACGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 35847 0.71 0.581235
Target:  5'- cGCGCU---GGgUCUGCACCAcCACCc -3'
miRNA:   3'- aCGCGAacuUUgAGACGUGGU-GUGGc -5'
19003 5' -52.6 NC_004684.1 + 50802 0.71 0.59231
Target:  5'- aGCGCgcaucacACUCcGCACCGCACUGc -3'
miRNA:   3'- aCGCGaacuu--UGAGaCGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 11283 0.71 0.603418
Target:  5'- aGCGC--GGAGCUgaucgGCACCACGCUGg -3'
miRNA:   3'- aCGCGaaCUUUGAga---CGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 4215 0.71 0.619011
Target:  5'- aUGCGCUccuggaccUGGAGCcgccgggcguauccCUGCACCACGCgCGa -3'
miRNA:   3'- -ACGCGA--------ACUUUGa-------------GACGUGGUGUG-GC- -5'
19003 5' -52.6 NC_004684.1 + 10087 0.7 0.648008
Target:  5'- gUGCGCcgGguGCUCa--GCCACACCGg -3'
miRNA:   3'- -ACGCGaaCuuUGAGacgUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 10190 0.7 0.648008
Target:  5'- cGCGCUUGucgccgguguGGCUgaGCACCcggcGCACCa -3'
miRNA:   3'- aCGCGAACu---------UUGAgaCGUGG----UGUGGc -5'
19003 5' -52.6 NC_004684.1 + 13197 0.7 0.659145
Target:  5'- cGCGCUggccggUGggGCggCgUGCACCGCgcgaACCGg -3'
miRNA:   3'- aCGCGA------ACuuUGa-G-ACGUGGUG----UGGC- -5'
19003 5' -52.6 NC_004684.1 + 54512 0.7 0.681329
Target:  5'- cGCGCggcgUGAGGCUCgaccCACaACACCGc -3'
miRNA:   3'- aCGCGa---ACUUUGAGac--GUGgUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 47418 0.69 0.725026
Target:  5'- uUGCGCaccUGguGCUCcgGCACCAC-CUGg -3'
miRNA:   3'- -ACGCGa--ACuuUGAGa-CGUGGUGuGGC- -5'
19003 5' -52.6 NC_004684.1 + 39866 0.69 0.725026
Target:  5'- gGCGCUUGGcgcgcaucAGCUC-GC-CCAgGCCGu -3'
miRNA:   3'- aCGCGAACU--------UUGAGaCGuGGUgUGGC- -5'
19003 5' -52.6 NC_004684.1 + 47476 0.69 0.725026
Target:  5'- cGCGCccaGAAggcugGCUCaGCGCCACuACCGc -3'
miRNA:   3'- aCGCGaa-CUU-----UGAGaCGUGGUG-UGGC- -5'
19003 5' -52.6 NC_004684.1 + 9560 0.69 0.746351
Target:  5'- cUGCGCUUGcccgccAGCUCcaGCGCCcggaACACCa -3'
miRNA:   3'- -ACGCGAACu-----UUGAGa-CGUGG----UGUGGc -5'
19003 5' -52.6 NC_004684.1 + 25634 0.69 0.746351
Target:  5'- cGCGCc-GAGGCUCUugaGCACCgAC-CCGg -3'
miRNA:   3'- aCGCGaaCUUUGAGA---CGUGG-UGuGGC- -5'
19003 5' -52.6 NC_004684.1 + 50888 0.68 0.756842
Target:  5'- aGCGCgac-GACUUcaUGUugCGCACCGa -3'
miRNA:   3'- aCGCGaacuUUGAG--ACGugGUGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.