miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19003 5' -52.6 NC_004684.1 + 348 0.66 0.87722
Target:  5'- gUGCGCaggcugUUGGcgaucAGCUCgGUguuACCGCGCCGg -3'
miRNA:   3'- -ACGCG------AACU-----UUGAGaCG---UGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 1261 0.66 0.884898
Target:  5'- aGCGCcUGcgGCUCgGCACCaaaguGCACgGu -3'
miRNA:   3'- aCGCGaACuuUGAGaCGUGG-----UGUGgC- -5'
19003 5' -52.6 NC_004684.1 + 2714 0.73 0.505381
Target:  5'- gGUGCcgGggGCaagUGCGCCACACCGc -3'
miRNA:   3'- aCGCGaaCuuUGag-ACGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 4215 0.71 0.619011
Target:  5'- aUGCGCUccuggaccUGGAGCcgccgggcguauccCUGCACCACGCgCGa -3'
miRNA:   3'- -ACGCGA--------ACUUUGa-------------GACGUGGUGUG-GC- -5'
19003 5' -52.6 NC_004684.1 + 5863 0.68 0.756842
Target:  5'- gGCGCagu-AGCgcgCUGCGCCcCACCGc -3'
miRNA:   3'- aCGCGaacuUUGa--GACGUGGuGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 8254 0.66 0.866851
Target:  5'- cGCGCccccggcgaucuggUUGAcgauCUgCUGCACCcgaGCACCGa -3'
miRNA:   3'- aCGCG--------------AACUuu--GA-GACGUGG---UGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 8282 0.8 0.199387
Target:  5'- cGCGCUUGAucagCUGCGCCugGCCc -3'
miRNA:   3'- aCGCGAACUuugaGACGUGGugUGGc -5'
19003 5' -52.6 NC_004684.1 + 9546 0.67 0.825956
Target:  5'- gUGCGCcggUUGGAGCcggUGCGCCGCgaacacgugGCCGa -3'
miRNA:   3'- -ACGCG---AACUUUGag-ACGUGGUG---------UGGC- -5'
19003 5' -52.6 NC_004684.1 + 9560 0.69 0.746351
Target:  5'- cUGCGCUUGcccgccAGCUCcaGCGCCcggaACACCa -3'
miRNA:   3'- -ACGCGAACu-----UUGAGa-CGUGG----UGUGGc -5'
19003 5' -52.6 NC_004684.1 + 9763 0.67 0.835078
Target:  5'- cGCGUUcGAGGC-CUGCGuggaagaccuCUACGCCGa -3'
miRNA:   3'- aCGCGAaCUUUGaGACGU----------GGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 10087 0.7 0.648008
Target:  5'- gUGCGCcgGguGCUCa--GCCACACCGg -3'
miRNA:   3'- -ACGCGaaCuuUGAGacgUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 10190 0.7 0.648008
Target:  5'- cGCGCUUGucgccgguguGGCUgaGCACCcggcGCACCa -3'
miRNA:   3'- aCGCGAACu---------UUGAgaCGUGG----UGUGGc -5'
19003 5' -52.6 NC_004684.1 + 10384 0.66 0.884898
Target:  5'- gGUGCggGcGAcCUCUgGCGCgACACCGg -3'
miRNA:   3'- aCGCGaaCuUU-GAGA-CGUGgUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 11283 0.71 0.603418
Target:  5'- aGCGC--GGAGCUgaucgGCACCACGCUGg -3'
miRNA:   3'- aCGCGaaCUUUGAga---CGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 13197 0.7 0.659145
Target:  5'- cGCGCUggccggUGggGCggCgUGCACCGCgcgaACCGg -3'
miRNA:   3'- aCGCGA------ACuuUGa-G-ACGUGGUG----UGGC- -5'
19003 5' -52.6 NC_004684.1 + 16978 1.1 0.001736
Target:  5'- gUGCGCUUGAAACUCUGCACCACACCGg -3'
miRNA:   3'- -ACGCGAACUUUGAGACGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 17512 0.68 0.777418
Target:  5'- cUGCGC---GAGCgcgGUGCCACGCCGg -3'
miRNA:   3'- -ACGCGaacUUUGagaCGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 18470 0.68 0.777418
Target:  5'- cGUGCccUGGAACuugccggugaugUCgagcgGCACCGCGCCGc -3'
miRNA:   3'- aCGCGa-ACUUUG------------AGa----CGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 18478 0.66 0.869282
Target:  5'- gGUGCUgucGGugUCcgGCACCGcCACCGc -3'
miRNA:   3'- aCGCGAac-UUugAGa-CGUGGU-GUGGC- -5'
19003 5' -52.6 NC_004684.1 + 20438 0.66 0.884898
Target:  5'- cUGCGCggu-GACggUGCACCgggcgACGCCGa -3'
miRNA:   3'- -ACGCGaacuUUGagACGUGG-----UGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.