miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19003 5' -52.6 NC_004684.1 + 33664 0.66 0.87722
Target:  5'- cGgGCaUGGcgucGCUgUGCACCAcCACCGc -3'
miRNA:   3'- aCgCGaACUu---UGAgACGUGGU-GUGGC- -5'
19003 5' -52.6 NC_004684.1 + 9546 0.67 0.825956
Target:  5'- gUGCGCcggUUGGAGCcggUGCGCCGCgaacacgugGCCGa -3'
miRNA:   3'- -ACGCG---AACUUUGag-ACGUGGUG---------UGGC- -5'
19003 5' -52.6 NC_004684.1 + 39238 0.67 0.825956
Target:  5'- uUGCGCgccGAcggguccaagGACUUgcuUGgACCACGCCGg -3'
miRNA:   3'- -ACGCGaa-CU----------UUGAG---ACgUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 58339 0.67 0.834175
Target:  5'- cGCGCccgGugGCcCUGCuggcguuGCCGCGCCGg -3'
miRNA:   3'- aCGCGaa-CuuUGaGACG-------UGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 9763 0.67 0.835078
Target:  5'- cGCGUUcGAGGC-CUGCGuggaagaccuCUACGCCGa -3'
miRNA:   3'- aCGCGAaCUUUGaGACGU----------GGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 25262 0.67 0.835078
Target:  5'- gGCGCUggaGAAGCUgcGCACCAaggGCCu -3'
miRNA:   3'- aCGCGAa--CUUUGAgaCGUGGUg--UGGc -5'
19003 5' -52.6 NC_004684.1 + 32287 0.66 0.851797
Target:  5'- gGUGCaUUGgcGCUCgGCGCUgugccugACGCCGg -3'
miRNA:   3'- aCGCG-AACuuUGAGaCGUGG-------UGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 18478 0.66 0.869282
Target:  5'- gGUGCUgucGGugUCcgGCACCGcCACCGc -3'
miRNA:   3'- aCGCGAac-UUugAGa-CGUGGU-GUGGC- -5'
19003 5' -52.6 NC_004684.1 + 36106 0.66 0.869282
Target:  5'- cGCGCggUGGGugcGC-CUGCuggccuucGCCACACCu -3'
miRNA:   3'- aCGCGa-ACUU---UGaGACG--------UGGUGUGGc -5'
19003 5' -52.6 NC_004684.1 + 51550 0.67 0.825956
Target:  5'- aGCacCUUGucGCUCUGCGCCagugcGCGCUGc -3'
miRNA:   3'- aCGc-GAACuuUGAGACGUGG-----UGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 63484 0.67 0.816625
Target:  5'- gGCGC--GAGGCcuccagCUGCGCCuGCGCCa -3'
miRNA:   3'- aCGCGaaCUUUGa-----GACGUGG-UGUGGc -5'
19003 5' -52.6 NC_004684.1 + 62293 0.67 0.816625
Target:  5'- gGCGCU----GCUCcaGCGCCGCGCgGg -3'
miRNA:   3'- aCGCGAacuuUGAGa-CGUGGUGUGgC- -5'
19003 5' -52.6 NC_004684.1 + 48629 0.72 0.534215
Target:  5'- gUGCGCcucuucccaggcccaGAuGCgCUGCACCGCGCCGg -3'
miRNA:   3'- -ACGCGaa-------------CUuUGaGACGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 11283 0.71 0.603418
Target:  5'- aGCGC--GGAGCUgaucgGCACCACGCUGg -3'
miRNA:   3'- aCGCGaaCUUUGAga---CGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 10087 0.7 0.648008
Target:  5'- gUGCGCcgGguGCUCa--GCCACACCGg -3'
miRNA:   3'- -ACGCGaaCuuUGAGacgUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 39866 0.69 0.725026
Target:  5'- gGCGCUUGGcgcgcaucAGCUC-GC-CCAgGCCGu -3'
miRNA:   3'- aCGCGAACU--------UUGAGaCGuGGUgUGGC- -5'
19003 5' -52.6 NC_004684.1 + 47418 0.69 0.725026
Target:  5'- uUGCGCaccUGguGCUCcgGCACCAC-CUGg -3'
miRNA:   3'- -ACGCGa--ACuuUGAGa-CGUGGUGuGGC- -5'
19003 5' -52.6 NC_004684.1 + 17512 0.68 0.777418
Target:  5'- cUGCGC---GAGCgcgGUGCCACGCCGg -3'
miRNA:   3'- -ACGCGaacUUUGagaCGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 59956 0.68 0.78748
Target:  5'- uUGUGCUggcGgcGCUC-GUGCCGCACCc -3'
miRNA:   3'- -ACGCGAa--CuuUGAGaCGUGGUGUGGc -5'
19003 5' -52.6 NC_004684.1 + 66717 0.67 0.81093
Target:  5'- cUGCGCggcGAACUCggugacggucuugcGCACCAC-CCGg -3'
miRNA:   3'- -ACGCGaacUUUGAGa-------------CGUGGUGuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.