miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19004 3' -57 NC_004684.1 + 51569 0.72 0.336241
Target:  5'- uGCCAU-CCGcaGGUCGCCAUCcugggGGCCUCg -3'
miRNA:   3'- -CGGUGcGGCa-UCAGCGGUAG-----CUGGAG- -5'
19004 3' -57 NC_004684.1 + 19392 0.72 0.352305
Target:  5'- uGUCAuggUGCUGUgggcguucaccGGUCGCCAguUCGGCCUCu -3'
miRNA:   3'- -CGGU---GCGGCA-----------UCAGCGGU--AGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 42036 0.72 0.352305
Target:  5'- uCCAgGCCGuUGGUgcCGCCGUUGACCg- -3'
miRNA:   3'- cGGUgCGGC-AUCA--GCGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 12719 0.72 0.360538
Target:  5'- aGCCACGCC--AGagGCCGUgGACCa- -3'
miRNA:   3'- -CGGUGCGGcaUCagCGGUAgCUGGag -5'
19004 3' -57 NC_004684.1 + 24684 0.72 0.360538
Target:  5'- cGCCACGuCCGcuGUCGUCAggaCGugCUCg -3'
miRNA:   3'- -CGGUGC-GGCauCAGCGGUa--GCugGAG- -5'
19004 3' -57 NC_004684.1 + 56258 0.72 0.368905
Target:  5'- aGCgC-CGCCGUcGUCGCCGucgUCGGCCa- -3'
miRNA:   3'- -CG-GuGCGGCAuCAGCGGU---AGCUGGag -5'
19004 3' -57 NC_004684.1 + 42526 0.72 0.368905
Target:  5'- cGCuCAcCGCCGUGGUCGgCGugcugacggcguUCGGCUUCg -3'
miRNA:   3'- -CG-GU-GCGGCAUCAGCgGU------------AGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 56044 0.71 0.377404
Target:  5'- cCCGCuggaGCgCGgcGUCGgCGUCGGCCUCg -3'
miRNA:   3'- cGGUG----CG-GCauCAGCgGUAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 44369 0.71 0.377404
Target:  5'- gGCgACGCCGUGcacgagugguguGcCGCCGUCGACUg- -3'
miRNA:   3'- -CGgUGCGGCAU------------CaGCGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 10323 0.71 0.386033
Target:  5'- -gCGCGCCGcaacgcaGGcCGCCAUCGACCcCg -3'
miRNA:   3'- cgGUGCGGCa------UCaGCGGUAGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 64800 0.71 0.386033
Target:  5'- aCCACGCCGuUGGU-GCUGUCGAgUUCg -3'
miRNA:   3'- cGGUGCGGC-AUCAgCGGUAGCUgGAG- -5'
19004 3' -57 NC_004684.1 + 40101 0.71 0.394792
Target:  5'- gGCCGaucucgugGCCGUAGcgggCGCUggCGGCCUCg -3'
miRNA:   3'- -CGGUg-------CGGCAUCa---GCGGuaGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 34160 0.71 0.41269
Target:  5'- cGCCGCGCCagGGUCGCCggUGugCc- -3'
miRNA:   3'- -CGGUGCGGcaUCAGCGGuaGCugGag -5'
19004 3' -57 NC_004684.1 + 50387 0.71 0.421825
Target:  5'- gGgCACGCgUGaAGUCGCCGUCgGGCCUg -3'
miRNA:   3'- -CgGUGCG-GCaUCAGCGGUAG-CUGGAg -5'
19004 3' -57 NC_004684.1 + 37946 0.71 0.421825
Target:  5'- uGCUcgACGCgGUGGagGCCAUCGuCCUg -3'
miRNA:   3'- -CGG--UGCGgCAUCagCGGUAGCuGGAg -5'
19004 3' -57 NC_004684.1 + 59561 0.71 0.421825
Target:  5'- gGCCGCGCagGUGGuggacaUCGCCGcCGACCg- -3'
miRNA:   3'- -CGGUGCGg-CAUC------AGCGGUaGCUGGag -5'
19004 3' -57 NC_004684.1 + 54282 0.71 0.421825
Target:  5'- cGCCACccgGCCGggGGUgCGCgCAUCGGCCc- -3'
miRNA:   3'- -CGGUG---CGGCa-UCA-GCG-GUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 56920 0.71 0.421825
Target:  5'- aGCUGCGCCagGUGGUCGUgGUCGAUg-- -3'
miRNA:   3'- -CGGUGCGG--CAUCAGCGgUAGCUGgag -5'
19004 3' -57 NC_004684.1 + 31751 0.7 0.431081
Target:  5'- gGCCcuguACGUCGgccuGUaCGCCAUCGACCcCg -3'
miRNA:   3'- -CGG----UGCGGCau--CA-GCGGUAGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 40518 0.7 0.440454
Target:  5'- cGCgCACGCCcaGGUUGUCGgcgguggCGACCUCc -3'
miRNA:   3'- -CG-GUGCGGcaUCAGCGGUa------GCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.