miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19006 3' -61 NC_004684.1 + 48380 1.06 0.000556
Target:  5'- cAACCCGGAGACCAGCGACCUGCGCGAg -3'
miRNA:   3'- -UUGGGCCUCUGGUCGCUGGACGCGCU- -5'
19006 3' -61 NC_004684.1 + 61464 0.78 0.067531
Target:  5'- cGCCCGGuGGCCAGCGcgGCCagccggucgUGCGCGAu -3'
miRNA:   3'- uUGGGCCuCUGGUCGC--UGG---------ACGCGCU- -5'
19006 3' -61 NC_004684.1 + 39107 0.78 0.077503
Target:  5'- cACCCGGuGACCGGguacGCCUGCGCGGg -3'
miRNA:   3'- uUGGGCCuCUGGUCgc--UGGACGCGCU- -5'
19006 3' -61 NC_004684.1 + 51460 0.75 0.112531
Target:  5'- cGCCCGGuGGCCgaggcccccaggauGGCGACCUGCG-GAu -3'
miRNA:   3'- uUGGGCCuCUGG--------------UCGCUGGACGCgCU- -5'
19006 3' -61 NC_004684.1 + 31508 0.75 0.113444
Target:  5'- aGugUCGGGGACCA-CGGCCcGCGCGAa -3'
miRNA:   3'- -UugGGCCUCUGGUcGCUGGaCGCGCU- -5'
19006 3' -61 NC_004684.1 + 65823 0.73 0.152059
Target:  5'- uGACCCGGAGgcACCGGCGGCUcacagGUGCa- -3'
miRNA:   3'- -UUGGGCCUC--UGGUCGCUGGa----CGCGcu -5'
19006 3' -61 NC_004684.1 + 47837 0.73 0.152059
Target:  5'- aGGCCCGGAGACCuGGC-ACCgcccgGCGCa- -3'
miRNA:   3'- -UUGGGCCUCUGG-UCGcUGGa----CGCGcu -5'
19006 3' -61 NC_004684.1 + 19456 0.73 0.164501
Target:  5'- uGCCCGGGcGgCGGUGGCCcGCGCGAc -3'
miRNA:   3'- uUGGGCCUcUgGUCGCUGGaCGCGCU- -5'
19006 3' -61 NC_004684.1 + 25388 0.73 0.173297
Target:  5'- gGAUCCaGGAGguugucGCCAGCGGCCaccGCGCGGg -3'
miRNA:   3'- -UUGGG-CCUC------UGGUCGCUGGa--CGCGCU- -5'
19006 3' -61 NC_004684.1 + 66750 0.73 0.173297
Target:  5'- cACCCGGuacagcaccCCGGCGACCUcgGCGCGGu -3'
miRNA:   3'- uUGGGCCucu------GGUCGCUGGA--CGCGCU- -5'
19006 3' -61 NC_004684.1 + 11831 0.72 0.192153
Target:  5'- -cCCCGGccaccGGGCCacGGCGGCCagcgGCGCGAg -3'
miRNA:   3'- uuGGGCC-----UCUGG--UCGCUGGa---CGCGCU- -5'
19006 3' -61 NC_004684.1 + 19743 0.71 0.207455
Target:  5'- cACCUGGAgcGugCAGU-ACCUGCGCGGc -3'
miRNA:   3'- uUGGGCCU--CugGUCGcUGGACGCGCU- -5'
19006 3' -61 NC_004684.1 + 57493 0.71 0.212785
Target:  5'- cAGCCCGGAccacucgucggcGGCCuGCu-CCUGCGCGGc -3'
miRNA:   3'- -UUGGGCCU------------CUGGuCGcuGGACGCGCU- -5'
19006 3' -61 NC_004684.1 + 29436 0.7 0.247277
Target:  5'- cGCCCGGAcccgcugggcGACCGGUucgacaucGACCuggUGCGCGAc -3'
miRNA:   3'- uUGGGCCU----------CUGGUCG--------CUGG---ACGCGCU- -5'
19006 3' -61 NC_004684.1 + 58462 0.7 0.266197
Target:  5'- uGCCCGcuGAGGCCAGCGcgaACUUGcCGCGc -3'
miRNA:   3'- uUGGGC--CUCUGGUCGC---UGGAC-GCGCu -5'
19006 3' -61 NC_004684.1 + 27739 0.7 0.266197
Target:  5'- cACgCGGAGGCCgguaccuggaGGUGACCgugccGCGCGAc -3'
miRNA:   3'- uUGgGCCUCUGG----------UCGCUGGa----CGCGCU- -5'
19006 3' -61 NC_004684.1 + 8668 0.7 0.272097
Target:  5'- uGCCCGGugcGGCCAggugccuGUGGCCgUGCGUGAg -3'
miRNA:   3'- uUGGGCCu--CUGGU-------CGCUGG-ACGCGCU- -5'
19006 3' -61 NC_004684.1 + 31117 0.7 0.272759
Target:  5'- aGGCgCUGGAgGACCuuGGCGACCUGgCGCa- -3'
miRNA:   3'- -UUG-GGCCU-CUGG--UCGCUGGAC-GCGcu -5'
19006 3' -61 NC_004684.1 + 8915 0.7 0.272759
Target:  5'- cGGCCUGGcAGAUCGGCGACgaggaUGUGCGc -3'
miRNA:   3'- -UUGGGCC-UCUGGUCGCUGg----ACGCGCu -5'
19006 3' -61 NC_004684.1 + 28162 0.7 0.272759
Target:  5'- cGGCCUGcaauGGCUGGCGugcaACCUGCGCGAg -3'
miRNA:   3'- -UUGGGCcu--CUGGUCGC----UGGACGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.