miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19006 3' -61 NC_004684.1 + 66482 0.69 0.314125
Target:  5'- cACCCGGuGGCggcuaggccuuggCGGCGGCCU-CGCGGg -3'
miRNA:   3'- uUGGGCCuCUG-------------GUCGCUGGAcGCGCU- -5'
19006 3' -61 NC_004684.1 + 53012 0.7 0.278775
Target:  5'- cGGCCCGGuGucggucaGCCAGuCGgcguacACCUGCGCGGu -3'
miRNA:   3'- -UUGGGCCuC-------UGGUC-GC------UGGACGCGCU- -5'
19006 3' -61 NC_004684.1 + 53072 0.7 0.27945
Target:  5'- cGACUCGcuGGuACCGGCGuacACCUGCGCGGc -3'
miRNA:   3'- -UUGGGCc-UC-UGGUCGC---UGGACGCGCU- -5'
19006 3' -61 NC_004684.1 + 28238 0.7 0.282163
Target:  5'- cACCCGGAG-CaCAGCGcgguggacccggccaGCCuggUGCGCGAg -3'
miRNA:   3'- uUGGGCCUCuG-GUCGC---------------UGG---ACGCGCU- -5'
19006 3' -61 NC_004684.1 + 56317 0.69 0.286271
Target:  5'- gGACgUGGAGACC-GCG--CUGCGCGAg -3'
miRNA:   3'- -UUGgGCCUCUGGuCGCugGACGCGCU- -5'
19006 3' -61 NC_004684.1 + 18607 0.69 0.293223
Target:  5'- uGGCUuuGAGGCCAGCGA-CUGgGCGAc -3'
miRNA:   3'- -UUGGgcCUCUGGUCGCUgGACgCGCU- -5'
19006 3' -61 NC_004684.1 + 42641 0.69 0.300306
Target:  5'- gGugCUGGuGccGCCAGCGAUgaGCGCGGu -3'
miRNA:   3'- -UugGGCCuC--UGGUCGCUGgaCGCGCU- -5'
19006 3' -61 NC_004684.1 + 66345 0.69 0.30752
Target:  5'- uGACgCCGG-GGCgGGCGGCCaGgGCGAc -3'
miRNA:   3'- -UUG-GGCCuCUGgUCGCUGGaCgCGCU- -5'
19006 3' -61 NC_004684.1 + 43430 0.69 0.30752
Target:  5'- aGGCCCGGcgAGGCCGaggucgguGCGGCggGCGCGGc -3'
miRNA:   3'- -UUGGGCC--UCUGGU--------CGCUGgaCGCGCU- -5'
19006 3' -61 NC_004684.1 + 8915 0.7 0.272759
Target:  5'- cGGCCUGGcAGAUCGGCGACgaggaUGUGCGc -3'
miRNA:   3'- -UUGGGCC-UCUGGUCGCUGg----ACGCGCu -5'
19006 3' -61 NC_004684.1 + 31117 0.7 0.272759
Target:  5'- aGGCgCUGGAgGACCuuGGCGACCUGgCGCa- -3'
miRNA:   3'- -UUG-GGCCU-CUGG--UCGCUGGAC-GCGcu -5'
19006 3' -61 NC_004684.1 + 28162 0.7 0.272759
Target:  5'- cGGCCUGcaauGGCUGGCGugcaACCUGCGCGAg -3'
miRNA:   3'- -UUGGGCcu--CUGGUCGC----UGGACGCGCU- -5'
19006 3' -61 NC_004684.1 + 51460 0.75 0.112531
Target:  5'- cGCCCGGuGGCCgaggcccccaggauGGCGACCUGCG-GAu -3'
miRNA:   3'- uUGGGCCuCUGG--------------UCGCUGGACGCgCU- -5'
19006 3' -61 NC_004684.1 + 31508 0.75 0.113444
Target:  5'- aGugUCGGGGACCA-CGGCCcGCGCGAa -3'
miRNA:   3'- -UugGGCCUCUGGUcGCUGGaCGCGCU- -5'
19006 3' -61 NC_004684.1 + 65823 0.73 0.152059
Target:  5'- uGACCCGGAGgcACCGGCGGCUcacagGUGCa- -3'
miRNA:   3'- -UUGGGCCUC--UGGUCGCUGGa----CGCGcu -5'
19006 3' -61 NC_004684.1 + 19456 0.73 0.164501
Target:  5'- uGCCCGGGcGgCGGUGGCCcGCGCGAc -3'
miRNA:   3'- uUGGGCCUcUgGUCGCUGGaCGCGCU- -5'
19006 3' -61 NC_004684.1 + 66750 0.73 0.173297
Target:  5'- cACCCGGuacagcaccCCGGCGACCUcgGCGCGGu -3'
miRNA:   3'- uUGGGCCucu------GGUCGCUGGA--CGCGCU- -5'
19006 3' -61 NC_004684.1 + 19743 0.71 0.207455
Target:  5'- cACCUGGAgcGugCAGU-ACCUGCGCGGc -3'
miRNA:   3'- uUGGGCCU--CugGUCGcUGGACGCGCU- -5'
19006 3' -61 NC_004684.1 + 29436 0.7 0.247277
Target:  5'- cGCCCGGAcccgcugggcGACCGGUucgacaucGACCuggUGCGCGAc -3'
miRNA:   3'- uUGGGCCU----------CUGGUCG--------CUGG---ACGCGCU- -5'
19006 3' -61 NC_004684.1 + 58462 0.7 0.266197
Target:  5'- uGCCCGcuGAGGCCAGCGcgaACUUGcCGCGc -3'
miRNA:   3'- uUGGGC--CUCUGGUCGC---UGGAC-GCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.