miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19006 3' -61 NC_004684.1 + 1462 0.66 0.458407
Target:  5'- gGACCUcaacggucgGGAGACCuacgcgccggaGGUGGCCcgccuguUGCGCGAc -3'
miRNA:   3'- -UUGGG---------CCUCUGG-----------UCGCUGG-------ACGCGCU- -5'
19006 3' -61 NC_004684.1 + 1483 0.66 0.431307
Target:  5'- uGCCCGGugcggcGGCCcuGGUGgccaACCUGCGCGc -3'
miRNA:   3'- uUGGGCCu-----CUGG--UCGC----UGGACGCGCu -5'
19006 3' -61 NC_004684.1 + 2046 0.68 0.337695
Target:  5'- uGGCCCuGGGGGCCGccaucGUGGCCUGCcugGCGc -3'
miRNA:   3'- -UUGGG-CCUCUGGU-----CGCUGGACG---CGCu -5'
19006 3' -61 NC_004684.1 + 2513 0.68 0.369967
Target:  5'- uACCCGGGGGC--GCGACCggacaacGCGCa- -3'
miRNA:   3'- uUGGGCCUCUGguCGCUGGa------CGCGcu -5'
19006 3' -61 NC_004684.1 + 2522 0.68 0.329953
Target:  5'- cGCCCGGcacugcGGACgCuGCGgcACCUGCGUGGa -3'
miRNA:   3'- uUGGGCC------UCUG-GuCGC--UGGACGCGCU- -5'
19006 3' -61 NC_004684.1 + 2679 0.66 0.448958
Target:  5'- gGACCCgauGGAGGCCcuGGCGGCCgccaacaUGCuCGAc -3'
miRNA:   3'- -UUGGG---CCUCUGG--UCGCUGG-------ACGcGCU- -5'
19006 3' -61 NC_004684.1 + 2782 0.67 0.416763
Target:  5'- cAGCCUGGAcGCCAGCGaguucgaguucgccgAggccaagaagcuCCUGCGCGGg -3'
miRNA:   3'- -UUGGGCCUcUGGUCGC---------------U------------GGACGCGCU- -5'
19006 3' -61 NC_004684.1 + 5063 0.66 0.466041
Target:  5'- uGugCUGGAGGCCuccGGCGaugagaucgcggagGCCcGCGCGGc -3'
miRNA:   3'- -UugGGCCUCUGG---UCGC--------------UGGaCGCGCU- -5'
19006 3' -61 NC_004684.1 + 5466 0.66 0.458407
Target:  5'- uGCCgGGAcacuGACCGGCGACggaacgaUUGCGCu- -3'
miRNA:   3'- uUGGgCCU----CUGGUCGCUG-------GACGCGcu -5'
19006 3' -61 NC_004684.1 + 5847 0.67 0.386876
Target:  5'- cACCCGGAccaACCAGCGGCaCgccaGCGCc- -3'
miRNA:   3'- uUGGGCCUc--UGGUCGCUG-Ga---CGCGcu -5'
19006 3' -61 NC_004684.1 + 6788 0.68 0.345567
Target:  5'- cGCCgGGuGACCGGCcugcgcACCgUGCGCGGc -3'
miRNA:   3'- uUGGgCCuCUGGUCGc-----UGG-ACGCGCU- -5'
19006 3' -61 NC_004684.1 + 6824 0.68 0.353571
Target:  5'- cGGCCUGGAGG--AGCuGGCCUacgGCGCGAa -3'
miRNA:   3'- -UUGGGCCUCUggUCG-CUGGA---CGCGCU- -5'
19006 3' -61 NC_004684.1 + 8668 0.7 0.272097
Target:  5'- uGCCCGGugcGGCCAggugccuGUGGCCgUGCGUGAg -3'
miRNA:   3'- uUGGGCCu--CUGGU-------CGCUGG-ACGCGCU- -5'
19006 3' -61 NC_004684.1 + 8915 0.7 0.272759
Target:  5'- cGGCCUGGcAGAUCGGCGACgaggaUGUGCGc -3'
miRNA:   3'- -UUGGGCC-UCUGGUCGCUGg----ACGCGCu -5'
19006 3' -61 NC_004684.1 + 9338 0.67 0.395519
Target:  5'- gGACgaGGAGGCCuccgguGCGuCCcgGCGCGAg -3'
miRNA:   3'- -UUGggCCUCUGGu-----CGCuGGa-CGCGCU- -5'
19006 3' -61 NC_004684.1 + 11831 0.72 0.192153
Target:  5'- -cCCCGGccaccGGGCCacGGCGGCCagcgGCGCGAg -3'
miRNA:   3'- uuGGGCC-----UCUGG--UCGCUGGa---CGCGCU- -5'
19006 3' -61 NC_004684.1 + 13026 0.69 0.314866
Target:  5'- cGCCCGGuuacgucgccGGGCCGGuCGGCUUcCGCGAg -3'
miRNA:   3'- uUGGGCC----------UCUGGUC-GCUGGAcGCGCU- -5'
19006 3' -61 NC_004684.1 + 14258 0.66 0.431307
Target:  5'- gGACCCGGucauuuCCGGCGgcACCUacccGCGUGAu -3'
miRNA:   3'- -UUGGGCCucu---GGUCGC--UGGA----CGCGCU- -5'
19006 3' -61 NC_004684.1 + 14662 0.68 0.337695
Target:  5'- cGACCUGGAGGaCAGCG-CCUacgaGCGUGGc -3'
miRNA:   3'- -UUGGGCCUCUgGUCGCuGGA----CGCGCU- -5'
19006 3' -61 NC_004684.1 + 15720 0.66 0.478586
Target:  5'- -uCCCGGAgacaccGACCAGCaagGGCCUcGUGCa- -3'
miRNA:   3'- uuGGGCCU------CUGGUCG---CUGGA-CGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.