Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19007 | 3' | -65.8 | NC_004684.1 | + | 64958 | 0.66 | 0.280124 |
Target: 5'- gCGGGCgauguCGGCCU-UGUCGCCGgUCUGGa -3' miRNA: 3'- -GCCCG-----GCUGGAcGCGGCGGCgAGGCU- -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 6541 | 0.66 | 0.314038 |
Target: 5'- -cGGCCGACau-CGCCGCCGUggacaUCGAc -3' miRNA: 3'- gcCCGGCUGgacGCGGCGGCGa----GGCU- -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 62513 | 0.66 | 0.312624 |
Target: 5'- -aGGCCG-CCUGaGCCGCCuucaauggaccaCUCCGAg -3' miRNA: 3'- gcCCGGCuGGACgCGGCGGc-----------GAGGCU- -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 11210 | 0.66 | 0.280124 |
Target: 5'- cCGGGCgcuCGAUa-GCGCCGCCGUcgucgCCGu -3' miRNA: 3'- -GCCCG---GCUGgaCGCGGCGGCGa----GGCu -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 55405 | 0.66 | 0.293329 |
Target: 5'- gGGGUCauGCCgucgGUGCCGCCGgUCgCGGu -3' miRNA: 3'- gCCCGGc-UGGa---CGCGGCGGCgAG-GCU- -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 20218 | 0.66 | 0.286667 |
Target: 5'- aGcGGCgGcCCUG-GCCGCCGCUaCGGu -3' miRNA: 3'- gC-CCGgCuGGACgCGGCGGCGAgGCU- -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 25013 | 0.66 | 0.280124 |
Target: 5'- gGGGCCGAuugucUCUGCcaucaguuGCUGCCuuUCCGGu -3' miRNA: 3'- gCCCGGCU-----GGACG--------CGGCGGcgAGGCU- -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 482 | 0.66 | 0.286667 |
Target: 5'- uGuGGCCGccaagGCC-GCGCCgaagGCCGCgCCGAa -3' miRNA: 3'- gC-CCGGC-----UGGaCGCGG----CGGCGaGGCU- -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 10183 | 0.66 | 0.300111 |
Target: 5'- -aGGCUGAgcaCCaucGCGCCGCCGCcuUCCa- -3' miRNA: 3'- gcCCGGCU---GGa--CGCGGCGGCG--AGGcu -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 5692 | 0.66 | 0.314038 |
Target: 5'- gGGGcCCGGCCUGC-CCaCgGCaCCGAc -3' miRNA: 3'- gCCC-GGCUGGACGcGGcGgCGaGGCU- -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 6469 | 0.66 | 0.307014 |
Target: 5'- -uGGCCGagGCgUGCGaCGCCGUggCCGAg -3' miRNA: 3'- gcCCGGC--UGgACGCgGCGGCGa-GGCU- -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 8725 | 0.66 | 0.314038 |
Target: 5'- gCGGcGCUGAUCccgaUGUucGCCGCCGCgcCCGGc -3' miRNA: 3'- -GCC-CGGCUGG----ACG--CGGCGGCGa-GGCU- -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 25733 | 0.66 | 0.300111 |
Target: 5'- uCGGcCCGGCCUuCGUaCGCCGCaCCGGa -3' miRNA: 3'- -GCCcGGCUGGAcGCG-GCGGCGaGGCU- -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 25423 | 0.66 | 0.279476 |
Target: 5'- gGGGugccuCCGACCU-UGCCGCUggccugucggacuGCUCCGGu -3' miRNA: 3'- gCCC-----GGCUGGAcGCGGCGG-------------CGAGGCU- -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 53916 | 0.66 | 0.302858 |
Target: 5'- gGGGUugccguugccguccuCGGCCUccaGCUGCUGCUCCGu -3' miRNA: 3'- gCCCG---------------GCUGGAcg-CGGCGGCGAGGCu -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 10498 | 0.66 | 0.293329 |
Target: 5'- -cGGCCGACgcaCUGgGCCGCCGa--CGGu -3' miRNA: 3'- gcCCGGCUG---GACgCGGCGGCgagGCU- -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 56236 | 0.66 | 0.293329 |
Target: 5'- gGcGGUCaGCCUGCGCaaCGCCGggaugaccuuCUCCGAg -3' miRNA: 3'- gC-CCGGcUGGACGCG--GCGGC----------GAGGCU- -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 60660 | 0.66 | 0.286667 |
Target: 5'- cCGGGCCaGCCagGUGUCGCCuuuCUUCGGc -3' miRNA: 3'- -GCCCGGcUGGa-CGCGGCGGc--GAGGCU- -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 7723 | 0.66 | 0.299427 |
Target: 5'- -uGGCCGugagccACCUgaucgguaucgccGCGCCGCUGUcgUCCGAc -3' miRNA: 3'- gcCCGGC------UGGA-------------CGCGGCGGCG--AGGCU- -5' |
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19007 | 3' | -65.8 | NC_004684.1 | + | 9577 | 0.66 | 0.300111 |
Target: 5'- aCGuGGCCGACCUGauCCGUgGCUgggacagcaugcUCGAg -3' miRNA: 3'- -GC-CCGGCUGGACgcGGCGgCGA------------GGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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