miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19007 3' -65.8 NC_004684.1 + 46412 1.07 0.000213
Target:  5'- uCGGGCCGACCUGCGCCGCCGCUCCGAc -3'
miRNA:   3'- -GCCCGGCUGGACGCGGCGGCGAGGCU- -5'
19007 3' -65.8 NC_004684.1 + 25796 0.83 0.015121
Target:  5'- uCGuGGCCGACCUGCGCCaggaaauGCCGCcgCCGAa -3'
miRNA:   3'- -GC-CCGGCUGGACGCGG-------CGGCGa-GGCU- -5'
19007 3' -65.8 NC_004684.1 + 53414 0.81 0.024048
Target:  5'- cCGGGCUGGCCUGCGCCGCgCGaCUgCCa- -3'
miRNA:   3'- -GCCCGGCUGGACGCGGCG-GC-GA-GGcu -5'
19007 3' -65.8 NC_004684.1 + 7491 0.78 0.037032
Target:  5'- aGGGCCGGuuCgUGCGCCGCCGCaUCGGg -3'
miRNA:   3'- gCCCGGCU--GgACGCGGCGGCGaGGCU- -5'
19007 3' -65.8 NC_004684.1 + 37120 0.75 0.06437
Target:  5'- aGGGCUGGCgugccgccagcgcaCUGCGCCGCCaGUUCUGGg -3'
miRNA:   3'- gCCCGGCUG--------------GACGCGGCGG-CGAGGCU- -5'
19007 3' -65.8 NC_004684.1 + 44925 0.75 0.065575
Target:  5'- aGGGaaCCGGCCUGgagcgcgggcgggauCGCCGCCGCgCCGAc -3'
miRNA:   3'- gCCC--GGCUGGAC---------------GCGGCGGCGaGGCU- -5'
19007 3' -65.8 NC_004684.1 + 42087 0.74 0.084449
Target:  5'- aGGGCCGACgaacCGCCGCCGC-CUGGu -3'
miRNA:   3'- gCCCGGCUGgac-GCGGCGGCGaGGCU- -5'
19007 3' -65.8 NC_004684.1 + 18196 0.74 0.084449
Target:  5'- -uGGCCGACCgagcagGcCGCCGCCGCcgCCGc -3'
miRNA:   3'- gcCCGGCUGGa-----C-GCGGCGGCGa-GGCu -5'
19007 3' -65.8 NC_004684.1 + 10139 0.73 0.088988
Target:  5'- gCGGGCCGACg-GUGCCGCCcGC-CCa- -3'
miRNA:   3'- -GCCCGGCUGgaCGCGGCGG-CGaGGcu -5'
19007 3' -65.8 NC_004684.1 + 18347 0.73 0.091343
Target:  5'- cCGGaGCCGACCggcgGCGCggUGCCGCUCg-- -3'
miRNA:   3'- -GCC-CGGCUGGa---CGCG--GCGGCGAGgcu -5'
19007 3' -65.8 NC_004684.1 + 51139 0.72 0.104033
Target:  5'- --uGCCGACgaauCUGCGCCGCCGaCUCCu- -3'
miRNA:   3'- gccCGGCUG----GACGCGGCGGC-GAGGcu -5'
19007 3' -65.8 NC_004684.1 + 8538 0.72 0.106486
Target:  5'- gCGGGCCggacgaggugGACCugUGCGCCGaCCGCaucaucccggacaUCCGAg -3'
miRNA:   3'- -GCCCGG----------CUGG--ACGCGGC-GGCG-------------AGGCU- -5'
19007 3' -65.8 NC_004684.1 + 12877 0.72 0.112425
Target:  5'- cCGaGGCCGccgccggggaGCCUGCGCuCGCCGCcagcggugCCGGu -3'
miRNA:   3'- -GC-CCGGC----------UGGACGCG-GCGGCGa-------GGCU- -5'
19007 3' -65.8 NC_004684.1 + 20620 0.71 0.127831
Target:  5'- -cGGUCGAcgguuCCUGCGCCGCCuGCgUCCGc -3'
miRNA:   3'- gcCCGGCU-----GGACGCGGCGG-CG-AGGCu -5'
19007 3' -65.8 NC_004684.1 + 51035 0.71 0.131138
Target:  5'- uCGGccgccagcuuGUCGGCCaGCGCCaGCCGCUCCu- -3'
miRNA:   3'- -GCC----------CGGCUGGaCGCGG-CGGCGAGGcu -5'
19007 3' -65.8 NC_004684.1 + 40943 0.71 0.131138
Target:  5'- cCGGGCaCGcCgCUGCgGCUGCCGUUCCa- -3'
miRNA:   3'- -GCCCG-GCuG-GACG-CGGCGGCGAGGcu -5'
19007 3' -65.8 NC_004684.1 + 47708 0.71 0.134524
Target:  5'- -cGGCCaGGCCU-UGCCGCCGCgCCGGu -3'
miRNA:   3'- gcCCGG-CUGGAcGCGGCGGCGaGGCU- -5'
19007 3' -65.8 NC_004684.1 + 48790 0.71 0.13764
Target:  5'- gCGGGCCGAUgaUGCaggacagGCCGCCGUUCUc- -3'
miRNA:   3'- -GCCCGGCUGg-ACG-------CGGCGGCGAGGcu -5'
19007 3' -65.8 NC_004684.1 + 7517 0.7 0.144072
Target:  5'- nGGGUgGACCUGCccggcaccgaccugGCCGCCGUggCGGc -3'
miRNA:   3'- gCCCGgCUGGACG--------------CGGCGGCGagGCU- -5'
19007 3' -65.8 NC_004684.1 + 23007 0.7 0.164631
Target:  5'- uGGGCCGACUgGcCGCCGUCgGCagCGAu -3'
miRNA:   3'- gCCCGGCUGGaC-GCGGCGG-CGagGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.