miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19007 3' -65.8 NC_004684.1 + 27512 0.67 0.260597
Target:  5'- gCGGGCCagaggcuggcaagGACgUGCGCaGCCGCcugCUGGa -3'
miRNA:   3'- -GCCCGG-------------CUGgACGCGgCGGCGa--GGCU- -5'
19007 3' -65.8 NC_004684.1 + 35232 0.69 0.195804
Target:  5'- gGGuGCCGuACCUgGUGCCGCcCGgUUCGAc -3'
miRNA:   3'- gCC-CGGC-UGGA-CGCGGCG-GCgAGGCU- -5'
19007 3' -65.8 NC_004684.1 + 63516 0.69 0.195804
Target:  5'- aGGG-CGGCCUgGCGUCGCaGCUCgCGGg -3'
miRNA:   3'- gCCCgGCUGGA-CGCGGCGgCGAG-GCU- -5'
19007 3' -65.8 NC_004684.1 + 9942 0.69 0.195804
Target:  5'- cCGGGCUGACCaugcucUGgGUCGCCacggucauggagGCUUCGAc -3'
miRNA:   3'- -GCCCGGCUGG------ACgCGGCGG------------CGAGGCU- -5'
19007 3' -65.8 NC_004684.1 + 62927 0.68 0.215326
Target:  5'- cCGGugacgaaGCCGACCaGCGCgCGgCGCgcgCCGAc -3'
miRNA:   3'- -GCC-------CGGCUGGaCGCG-GCgGCGa--GGCU- -5'
19007 3' -65.8 NC_004684.1 + 3693 0.68 0.226514
Target:  5'- -uGGCaggaGAUCgccaGCGCCGCCGCgcuggCCGGu -3'
miRNA:   3'- gcCCGg---CUGGa---CGCGGCGGCGa----GGCU- -5'
19007 3' -65.8 NC_004684.1 + 65905 0.68 0.232013
Target:  5'- -uGGCC-ACCaGgGCCGCCGCaCCGGg -3'
miRNA:   3'- gcCCGGcUGGaCgCGGCGGCGaGGCU- -5'
19007 3' -65.8 NC_004684.1 + 36768 0.67 0.243348
Target:  5'- aGGGCCGcGCCcgGUGCCGaCGCUggUCGGc -3'
miRNA:   3'- gCCCGGC-UGGa-CGCGGCgGCGA--GGCU- -5'
19007 3' -65.8 NC_004684.1 + 55945 0.67 0.243348
Target:  5'- gCGaGGCCGACgCcGaCGCCGC-GCUCCa- -3'
miRNA:   3'- -GC-CCGGCUG-GaC-GCGGCGgCGAGGcu -5'
19007 3' -65.8 NC_004684.1 + 42864 0.69 0.191054
Target:  5'- gGGGCCaACCagGcCGCCGCaCGC-CCGGc -3'
miRNA:   3'- gCCCGGcUGGa-C-GCGGCG-GCGaGGCU- -5'
19007 3' -65.8 NC_004684.1 + 46470 0.69 0.177406
Target:  5'- aGGGCC-ACCacGCGCuUGCCGCUgCGGu -3'
miRNA:   3'- gCCCGGcUGGa-CGCG-GCGGCGAgGCU- -5'
19007 3' -65.8 NC_004684.1 + 3487 0.7 0.168795
Target:  5'- cCGGGCCGcACCgugGcCGCCaggacGCCGCaaucgCCGAc -3'
miRNA:   3'- -GCCCGGC-UGGa--C-GCGG-----CGGCGa----GGCU- -5'
19007 3' -65.8 NC_004684.1 + 18347 0.73 0.091343
Target:  5'- cCGGaGCCGACCggcgGCGCggUGCCGCUCg-- -3'
miRNA:   3'- -GCC-CGGCUGGa---CGCG--GCGGCGAGgcu -5'
19007 3' -65.8 NC_004684.1 + 51139 0.72 0.104033
Target:  5'- --uGCCGACgaauCUGCGCCGCCGaCUCCu- -3'
miRNA:   3'- gccCGGCUG----GACGCGGCGGC-GAGGcu -5'
19007 3' -65.8 NC_004684.1 + 12877 0.72 0.112425
Target:  5'- cCGaGGCCGccgccggggaGCCUGCGCuCGCCGCcagcggugCCGGu -3'
miRNA:   3'- -GC-CCGGC----------UGGACGCG-GCGGCGa-------GGCU- -5'
19007 3' -65.8 NC_004684.1 + 40943 0.71 0.131138
Target:  5'- cCGGGCaCGcCgCUGCgGCUGCCGUUCCa- -3'
miRNA:   3'- -GCCCG-GCuG-GACG-CGGCGGCGAGGcu -5'
19007 3' -65.8 NC_004684.1 + 48790 0.71 0.13764
Target:  5'- gCGGGCCGAUgaUGCaggacagGCCGCCGUUCUc- -3'
miRNA:   3'- -GCCCGGCUGg-ACG-------CGGCGGCGAGGcu -5'
19007 3' -65.8 NC_004684.1 + 23007 0.7 0.164631
Target:  5'- uGGGCCGACUgGcCGCCGUCgGCagCGAu -3'
miRNA:   3'- gCCCGGCUGGaC-GCGGCGG-CGagGCU- -5'
19007 3' -65.8 NC_004684.1 + 53187 0.7 0.164631
Target:  5'- -aGGCCGACC-GCGCCGCUGg-CCa- -3'
miRNA:   3'- gcCCGGCUGGaCGCGGCGGCgaGGcu -5'
19007 3' -65.8 NC_004684.1 + 11815 0.7 0.168795
Target:  5'- aGGGCgCGAgC-GCGCCGCUG-UCCGGc -3'
miRNA:   3'- gCCCG-GCUgGaCGCGGCGGCgAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.