miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19009 5' -55.4 NC_004684.1 + 46196 1.13 0.000659
Target:  5'- cGUGCUUGGCCCGGAUAACGUGUGGCCg -3'
miRNA:   3'- -CACGAACCGGGCCUAUUGCACACCGG- -5'
19009 5' -55.4 NC_004684.1 + 40417 0.75 0.287735
Target:  5'- -cGCaccGGCCUGGAUGGCGgcguUGGCCa -3'
miRNA:   3'- caCGaa-CCGGGCCUAUUGCac--ACCGG- -5'
19009 5' -55.4 NC_004684.1 + 19446 0.74 0.309819
Target:  5'- cGUGCgcccauGCCCGGGcGGCG-GUGGCCc -3'
miRNA:   3'- -CACGaac---CGGGCCUaUUGCaCACCGG- -5'
19009 5' -55.4 NC_004684.1 + 7553 0.72 0.429424
Target:  5'- gGUGCUggaccGGcCCCGGGUGGCGcUGgugcGGCUg -3'
miRNA:   3'- -CACGAa----CC-GGGCCUAUUGC-ACa---CCGG- -5'
19009 5' -55.4 NC_004684.1 + 26015 0.71 0.445703
Target:  5'- -aGCcaucGGCCCGGAUGAaucggucgaugaacCGgGUGGCCu -3'
miRNA:   3'- caCGaa--CCGGGCCUAUU--------------GCaCACCGG- -5'
19009 5' -55.4 NC_004684.1 + 54959 0.71 0.458382
Target:  5'- cUGCUUcGCgCGGGgugAACGgGUGGCCg -3'
miRNA:   3'- cACGAAcCGgGCCUa--UUGCaCACCGG- -5'
19009 5' -55.4 NC_004684.1 + 1929 0.71 0.478256
Target:  5'- cUGCcgGGCCUGGuaccGGCGcacgGUGGCCg -3'
miRNA:   3'- cACGaaCCGGGCCua--UUGCa---CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 57888 0.7 0.508832
Target:  5'- gGUGCUggcuggUGGCCgGGcUGAag-GUGGCCg -3'
miRNA:   3'- -CACGA------ACCGGgCCuAUUgcaCACCGG- -5'
19009 5' -55.4 NC_004684.1 + 66508 0.7 0.519207
Target:  5'- uUGCgcGGCgCGGGgaucACGUGcUGGCCg -3'
miRNA:   3'- cACGaaCCGgGCCUau--UGCAC-ACCGG- -5'
19009 5' -55.4 NC_004684.1 + 15294 0.7 0.529666
Target:  5'- cUGCUgGGCCUGGucGACGU--GGCCg -3'
miRNA:   3'- cACGAaCCGGGCCuaUUGCAcaCCGG- -5'
19009 5' -55.4 NC_004684.1 + 19307 0.7 0.5402
Target:  5'- cGUGCUU-GCCCGGccGACGccggaaccgGUGGUCg -3'
miRNA:   3'- -CACGAAcCGGGCCuaUUGCa--------CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 5452 0.69 0.561472
Target:  5'- gGUGCaccaGGCCCGGcgGGUGccGUGGCCc -3'
miRNA:   3'- -CACGaa--CCGGGCCuaUUGCa-CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 60067 0.69 0.572195
Target:  5'- -cGCgcGGCCCGGcgGccCGUGcgGGCCu -3'
miRNA:   3'- caCGaaCCGGGCCuaUu-GCACa-CCGG- -5'
19009 5' -55.4 NC_004684.1 + 35996 0.69 0.593776
Target:  5'- -cGCgUUGGCCUGGuuggcgAGCGUGaUGGUg -3'
miRNA:   3'- caCG-AACCGGGCCua----UUGCAC-ACCGg -5'
19009 5' -55.4 NC_004684.1 + 60287 0.68 0.626364
Target:  5'- uUGCgUGGCCCGGuccuCG-GcGGCCu -3'
miRNA:   3'- cACGaACCGGGCCuauuGCaCaCCGG- -5'
19009 5' -55.4 NC_004684.1 + 55281 0.68 0.648129
Target:  5'- -aGCcggGGUCgGGGguuGCGUGaUGGCCg -3'
miRNA:   3'- caCGaa-CCGGgCCUau-UGCAC-ACCGG- -5'
19009 5' -55.4 NC_004684.1 + 57209 0.68 0.648129
Target:  5'- -cGCUgggcGGUCUGGAacuccucgAGCGcgGUGGCCa -3'
miRNA:   3'- caCGAa---CCGGGCCUa-------UUGCa-CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 23494 0.68 0.658996
Target:  5'- -cGCUuuccUGGCCUGGAaGACGcUGUccGGCg -3'
miRNA:   3'- caCGA----ACCGGGCCUaUUGC-ACA--CCGg -5'
19009 5' -55.4 NC_004684.1 + 24900 0.67 0.669837
Target:  5'- -cGCgUUGGCCUggucguuggacaGGAUGcCGaagGUGGCCa -3'
miRNA:   3'- caCG-AACCGGG------------CCUAUuGCa--CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 43388 0.67 0.680644
Target:  5'- aUGCccgacGGCCCGGAgAACGgGUcGCCg -3'
miRNA:   3'- cACGaa---CCGGGCCUaUUGCaCAcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.