miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19009 5' -55.4 NC_004684.1 + 1929 0.71 0.478256
Target:  5'- cUGCcgGGCCUGGuaccGGCGcacgGUGGCCg -3'
miRNA:   3'- cACGaaCCGGGCCua--UUGCa---CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 4180 0.67 0.71275
Target:  5'- -cGgUUGcGCCCGGcgGGCGcgGUGGUUc -3'
miRNA:   3'- caCgAAC-CGGGCCuaUUGCa-CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 5189 0.66 0.774568
Target:  5'- cUGgUUGGCCaGGAcggcAACGUGUucgccaucaucGGCCg -3'
miRNA:   3'- cACgAACCGGgCCUa---UUGCACA-----------CCGG- -5'
19009 5' -55.4 NC_004684.1 + 5452 0.69 0.561472
Target:  5'- gGUGCaccaGGCCCGGcgGGUGccGUGGCCc -3'
miRNA:   3'- -CACGaa--CCGGGCCuaUUGCa-CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 7553 0.72 0.429424
Target:  5'- gGUGCUggaccGGcCCCGGGUGGCGcUGgugcGGCUg -3'
miRNA:   3'- -CACGAa----CC-GGGCCUAUUGC-ACa---CCGG- -5'
19009 5' -55.4 NC_004684.1 + 8663 0.67 0.680644
Target:  5'- aUGCgu-GCCCGGu--GCGgccaggugccUGUGGCCg -3'
miRNA:   3'- cACGaacCGGGCCuauUGC----------ACACCGG- -5'
19009 5' -55.4 NC_004684.1 + 10938 0.66 0.733785
Target:  5'- cGUGCUccaGGCCUuugaGGAUcGugGUGgcGGCCu -3'
miRNA:   3'- -CACGAa--CCGGG----CCUA-UugCACa-CCGG- -5'
19009 5' -55.4 NC_004684.1 + 11367 0.66 0.754421
Target:  5'- -cGCgaGGUgCCGGugGUGGCGUccaucGUGGCCu -3'
miRNA:   3'- caCGaaCCG-GGCC--UAUUGCA-----CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 15294 0.7 0.529666
Target:  5'- cUGCUgGGCCUGGucGACGU--GGCCg -3'
miRNA:   3'- cACGAaCCGGGCCuaUUGCAcaCCGG- -5'
19009 5' -55.4 NC_004684.1 + 19307 0.7 0.5402
Target:  5'- cGUGCUU-GCCCGGccGACGccggaaccgGUGGUCg -3'
miRNA:   3'- -CACGAAcCGGGCCuaUUGCa--------CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 19446 0.74 0.309819
Target:  5'- cGUGCgcccauGCCCGGGcGGCG-GUGGCCc -3'
miRNA:   3'- -CACGaac---CGGGCCUaUUGCaCACCGG- -5'
19009 5' -55.4 NC_004684.1 + 23494 0.68 0.658996
Target:  5'- -cGCUuuccUGGCCUGGAaGACGcUGUccGGCg -3'
miRNA:   3'- caCGA----ACCGGGCCUaUUGC-ACA--CCGg -5'
19009 5' -55.4 NC_004684.1 + 23681 0.66 0.723312
Target:  5'- cUGgUcGGCCCGGAccagAGCGU--GGCCu -3'
miRNA:   3'- cACgAaCCGGGCCUa---UUGCAcaCCGG- -5'
19009 5' -55.4 NC_004684.1 + 24546 0.66 0.733785
Target:  5'- uGUGCc-GGgCCGcGAUAGCGUcccGGCCa -3'
miRNA:   3'- -CACGaaCCgGGC-CUAUUGCAca-CCGG- -5'
19009 5' -55.4 NC_004684.1 + 24900 0.67 0.669837
Target:  5'- -cGCgUUGGCCUggucguuggacaGGAUGcCGaagGUGGCCa -3'
miRNA:   3'- caCG-AACCGGG------------CCUAUuGCa--CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 26015 0.71 0.445703
Target:  5'- -aGCcaucGGCCCGGAUGAaucggucgaugaacCGgGUGGCCu -3'
miRNA:   3'- caCGaa--CCGGGCCUAUU--------------GCaCACCGG- -5'
19009 5' -55.4 NC_004684.1 + 26440 0.67 0.691406
Target:  5'- -cGCcggUGGCCCGGuGUAcgGCGgcacgccUGGCCg -3'
miRNA:   3'- caCGa--ACCGGGCC-UAU--UGCac-----ACCGG- -5'
19009 5' -55.4 NC_004684.1 + 27022 0.66 0.774568
Target:  5'- -aGCcaGGCaCCGGGUGcCG-GUGGCa -3'
miRNA:   3'- caCGaaCCG-GGCCUAUuGCaCACCGg -5'
19009 5' -55.4 NC_004684.1 + 28060 0.66 0.774568
Target:  5'- gGUGgUcGGcCCCGGcg---GUGUGGCCg -3'
miRNA:   3'- -CACgAaCC-GGGCCuauugCACACCGG- -5'
19009 5' -55.4 NC_004684.1 + 29097 0.67 0.702111
Target:  5'- -aGCcUGGCCUGGAgc-CGUGagcUGcGCCa -3'
miRNA:   3'- caCGaACCGGGCCUauuGCAC---AC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.