miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19009 5' -55.4 NC_004684.1 + 46396 0.66 0.754421
Target:  5'- -cGC-UGGCCgGGAUGGuCGgGUccacGGCCa -3'
miRNA:   3'- caCGaACCGGgCCUAUU-GCaCA----CCGG- -5'
19009 5' -55.4 NC_004684.1 + 4180 0.67 0.71275
Target:  5'- -cGgUUGcGCCCGGcgGGCGcgGUGGUUc -3'
miRNA:   3'- caCgAAC-CGGGCCuaUUGCa-CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 23681 0.66 0.723312
Target:  5'- cUGgUcGGCCCGGAccagAGCGU--GGCCu -3'
miRNA:   3'- cACgAaCCGGGCCUa---UUGCAcaCCGG- -5'
19009 5' -55.4 NC_004684.1 + 24546 0.66 0.733785
Target:  5'- uGUGCc-GGgCCGcGAUAGCGUcccGGCCa -3'
miRNA:   3'- -CACGaaCCgGGC-CUAUUGCAca-CCGG- -5'
19009 5' -55.4 NC_004684.1 + 57510 0.66 0.733785
Target:  5'- gGUGCcu-GCgCCGGAUcccgaGGCG-GUGGCCc -3'
miRNA:   3'- -CACGaacCG-GGCCUA-----UUGCaCACCGG- -5'
19009 5' -55.4 NC_004684.1 + 57125 0.66 0.743126
Target:  5'- -cGCUggcagcacUGGCgCGGcugguucgccuccAUGGCGgcgGUGGCCg -3'
miRNA:   3'- caCGA--------ACCGgGCC-------------UAUUGCa--CACCGG- -5'
19009 5' -55.4 NC_004684.1 + 45237 0.66 0.744158
Target:  5'- gGUGCUggucaGGCCCGGcagccAGCGcUGgucgcGGCCc -3'
miRNA:   3'- -CACGAa----CCGGGCCua---UUGC-ACa----CCGG- -5'
19009 5' -55.4 NC_004684.1 + 64941 0.66 0.744158
Target:  5'- gGUGagc-GCCUGGcgGGCG-GUGGCCc -3'
miRNA:   3'- -CACgaacCGGGCCuaUUGCaCACCGG- -5'
19009 5' -55.4 NC_004684.1 + 48710 0.66 0.748277
Target:  5'- cGUGCggcGGCCCugccagcgcuugccGGUGGCGaUGUGGCa -3'
miRNA:   3'- -CACGaa-CCGGGc-------------CUAUUGC-ACACCGg -5'
19009 5' -55.4 NC_004684.1 + 29097 0.67 0.702111
Target:  5'- -aGCcUGGCCUGGAgc-CGUGagcUGcGCCa -3'
miRNA:   3'- caCGaACCGGGCCUauuGCAC---AC-CGG- -5'
19009 5' -55.4 NC_004684.1 + 26440 0.67 0.691406
Target:  5'- -cGCcggUGGCCCGGuGUAcgGCGgcacgccUGGCCg -3'
miRNA:   3'- caCGa--ACCGGGCC-UAU--UGCac-----ACCGG- -5'
19009 5' -55.4 NC_004684.1 + 43388 0.67 0.680644
Target:  5'- aUGCccgacGGCCCGGAgAACGgGUcGCCg -3'
miRNA:   3'- cACGaa---CCGGGCCUaUUGCaCAcCGG- -5'
19009 5' -55.4 NC_004684.1 + 7553 0.72 0.429424
Target:  5'- gGUGCUggaccGGcCCCGGGUGGCGcUGgugcGGCUg -3'
miRNA:   3'- -CACGAa----CC-GGGCCUAUUGC-ACa---CCGG- -5'
19009 5' -55.4 NC_004684.1 + 54959 0.71 0.458382
Target:  5'- cUGCUUcGCgCGGGgugAACGgGUGGCCg -3'
miRNA:   3'- cACGAAcCGgGCCUa--UUGCaCACCGG- -5'
19009 5' -55.4 NC_004684.1 + 57888 0.7 0.508832
Target:  5'- gGUGCUggcuggUGGCCgGGcUGAag-GUGGCCg -3'
miRNA:   3'- -CACGA------ACCGGgCCuAUUgcaCACCGG- -5'
19009 5' -55.4 NC_004684.1 + 60067 0.69 0.572195
Target:  5'- -cGCgcGGCCCGGcgGccCGUGcgGGCCu -3'
miRNA:   3'- caCGaaCCGGGCCuaUu-GCACa-CCGG- -5'
19009 5' -55.4 NC_004684.1 + 60287 0.68 0.626364
Target:  5'- uUGCgUGGCCCGGuccuCG-GcGGCCu -3'
miRNA:   3'- cACGaACCGGGCCuauuGCaCaCCGG- -5'
19009 5' -55.4 NC_004684.1 + 23494 0.68 0.658996
Target:  5'- -cGCUuuccUGGCCUGGAaGACGcUGUccGGCg -3'
miRNA:   3'- caCGA----ACCGGGCCUaUUGC-ACA--CCGg -5'
19009 5' -55.4 NC_004684.1 + 43607 0.67 0.680644
Target:  5'- uUGCggUGaacaGCCCGGcc-ACgGUGUGGCCg -3'
miRNA:   3'- cACGa-AC----CGGGCCuauUG-CACACCGG- -5'
19009 5' -55.4 NC_004684.1 + 50819 0.67 0.680644
Target:  5'- -cGCUUGGCCCagcGGGUcaggAACuccgGUGGCg -3'
miRNA:   3'- caCGAACCGGG---CCUA----UUGca--CACCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.