Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19009 | 5' | -55.4 | NC_004684.1 | + | 66508 | 0.7 | 0.519207 |
Target: 5'- uUGCgcGGCgCGGGgaucACGUGcUGGCCg -3' miRNA: 3'- cACGaaCCGgGCCUau--UGCAC-ACCGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 64941 | 0.66 | 0.744158 |
Target: 5'- gGUGagc-GCCUGGcgGGCG-GUGGCCc -3' miRNA: 3'- -CACgaacCGGGCCuaUUGCaCACCGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 62344 | 0.66 | 0.723312 |
Target: 5'- -cGUggGaGCgCCGGGUGccagacGCGUgGUGGCCa -3' miRNA: 3'- caCGaaC-CG-GGCCUAU------UGCA-CACCGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 60287 | 0.68 | 0.626364 |
Target: 5'- uUGCgUGGCCCGGuccuCG-GcGGCCu -3' miRNA: 3'- cACGaACCGGGCCuauuGCaCaCCGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 60205 | 0.66 | 0.773574 |
Target: 5'- uGUGCUgaucggcguUGGCCuCGGcguuGUAggugcacccgcagGCG-GUGGCCa -3' miRNA: 3'- -CACGA---------ACCGG-GCC----UAU-------------UGCaCACCGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 60067 | 0.69 | 0.572195 |
Target: 5'- -cGCgcGGCCCGGcgGccCGUGcgGGCCu -3' miRNA: 3'- caCGaaCCGGGCCuaUu-GCACa-CCGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 57888 | 0.7 | 0.508832 |
Target: 5'- gGUGCUggcuggUGGCCgGGcUGAag-GUGGCCg -3' miRNA: 3'- -CACGA------ACCGGgCCuAUUgcaCACCGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 57510 | 0.66 | 0.733785 |
Target: 5'- gGUGCcu-GCgCCGGAUcccgaGGCG-GUGGCCc -3' miRNA: 3'- -CACGaacCG-GGCCUA-----UUGCaCACCGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 57209 | 0.68 | 0.648129 |
Target: 5'- -cGCUgggcGGUCUGGAacuccucgAGCGcgGUGGCCa -3' miRNA: 3'- caCGAa---CCGGGCCUa-------UUGCa-CACCGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 57125 | 0.66 | 0.743126 |
Target: 5'- -cGCUggcagcacUGGCgCGGcugguucgccuccAUGGCGgcgGUGGCCg -3' miRNA: 3'- caCGA--------ACCGgGCC-------------UAUUGCa--CACCGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 56977 | 0.66 | 0.765568 |
Target: 5'- -gGCggUGGUCaGGAUGGCGUGguucugcacgcuggcGGCCu -3' miRNA: 3'- caCGa-ACCGGgCCUAUUGCACa--------------CCGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 56701 | 0.66 | 0.764561 |
Target: 5'- -aGCUgGGCCCGGGggugaagcUGGCG-GUGcugauGCCg -3' miRNA: 3'- caCGAaCCGGGCCU--------AUUGCaCAC-----CGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 55281 | 0.68 | 0.648129 |
Target: 5'- -aGCcggGGUCgGGGguuGCGUGaUGGCCg -3' miRNA: 3'- caCGaa-CCGGgCCUau-UGCAC-ACCGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 54959 | 0.71 | 0.458382 |
Target: 5'- cUGCUUcGCgCGGGgugAACGgGUGGCCg -3' miRNA: 3'- cACGAAcCGgGCCUa--UUGCaCACCGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 50819 | 0.67 | 0.680644 |
Target: 5'- -cGCUUGGCCCagcGGGUcaggAACuccgGUGGCg -3' miRNA: 3'- caCGAACCGGG---CCUA----UUGca--CACCGg -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 48710 | 0.66 | 0.748277 |
Target: 5'- cGUGCggcGGCCCugccagcgcuugccGGUGGCGaUGUGGCa -3' miRNA: 3'- -CACGaa-CCGGGc-------------CUAUUGC-ACACCGg -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 46396 | 0.66 | 0.754421 |
Target: 5'- -cGC-UGGCCgGGAUGGuCGgGUccacGGCCa -3' miRNA: 3'- caCGaACCGGgCCUAUU-GCaCA----CCGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 46196 | 1.13 | 0.000659 |
Target: 5'- cGUGCUUGGCCCGGAUAACGUGUGGCCg -3' miRNA: 3'- -CACGAACCGGGCCUAUUGCACACCGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 45237 | 0.66 | 0.744158 |
Target: 5'- gGUGCUggucaGGCCCGGcagccAGCGcUGgucgcGGCCc -3' miRNA: 3'- -CACGAa----CCGGGCCua---UUGC-ACa----CCGG- -5' |
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19009 | 5' | -55.4 | NC_004684.1 | + | 43607 | 0.67 | 0.680644 |
Target: 5'- uUGCggUGaacaGCCCGGcc-ACgGUGUGGCCg -3' miRNA: 3'- cACGa-AC----CGGGCCuauUG-CACACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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