miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19011 3' -57.6 NC_004684.1 + 44781 1.09 0.000798
Target:  5'- cCACAGCGCCGUAACGGCCUCACCGAGg -3'
miRNA:   3'- -GUGUCGCGGCAUUGCCGGAGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 63862 0.79 0.107972
Target:  5'- cCACGuGCGCgGUGGCGGCCuUCAUCGGGc -3'
miRNA:   3'- -GUGU-CGCGgCAUUGCCGG-AGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 64399 0.78 0.127155
Target:  5'- gCACGGCGCgGUGAUGGCCUCGaacCCGu- -3'
miRNA:   3'- -GUGUCGCGgCAUUGCCGGAGU---GGCuc -5'
19011 3' -57.6 NC_004684.1 + 11446 0.77 0.157641
Target:  5'- gCGCGGCGUCGgcGuCGGCCUCGCCc-- -3'
miRNA:   3'- -GUGUCGCGGCauU-GCCGGAGUGGcuc -5'
19011 3' -57.6 NC_004684.1 + 53730 0.76 0.170688
Target:  5'- gCAUGGUGCCGgguucGACGGCCaggaaCACCGAGg -3'
miRNA:   3'- -GUGUCGCGGCa----UUGCCGGa----GUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 37473 0.76 0.175247
Target:  5'- gCACAGCGCCGUAuaggaGGCCUCGuguaCGAc -3'
miRNA:   3'- -GUGUCGCGGCAUug---CCGGAGUg---GCUc -5'
19011 3' -57.6 NC_004684.1 + 55459 0.76 0.175247
Target:  5'- uCGCcaAGCGCgGUGAaGGCCUgGCCGAGg -3'
miRNA:   3'- -GUG--UCGCGgCAUUgCCGGAgUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 48658 0.75 0.204934
Target:  5'- gCACcGCGCCGgagaGGCCuUCACCGGGc -3'
miRNA:   3'- -GUGuCGCGGCauugCCGG-AGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 41080 0.75 0.210287
Target:  5'- gGCGGC-CCG--GCGGCCUgGCCGAGc -3'
miRNA:   3'- gUGUCGcGGCauUGCCGGAgUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 19793 0.73 0.257552
Target:  5'- gACGGCGgUGU-GCGGCCuacaUCGCCGAGc -3'
miRNA:   3'- gUGUCGCgGCAuUGCCGG----AGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 57525 0.73 0.270652
Target:  5'- gCGCGGCGUCGggauccGGCGGCagCUCACCGGc -3'
miRNA:   3'- -GUGUCGCGGCa-----UUGCCG--GAGUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 51477 0.73 0.277401
Target:  5'- -cCGGUGCCGgguaGGCCUCuGCCGGGa -3'
miRNA:   3'- guGUCGCGGCauugCCGGAG-UGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 58238 0.73 0.284283
Target:  5'- gACGGUGUCGU--CGGCCagGCCGAGc -3'
miRNA:   3'- gUGUCGCGGCAuuGCCGGagUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 458 0.73 0.2913
Target:  5'- ---cGCGCCGga--GGCCuUCGCCGAGg -3'
miRNA:   3'- guguCGCGGCauugCCGG-AGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 15578 0.72 0.31316
Target:  5'- gCGCAGCGCgc--GCGGCCUgGCCGuGg -3'
miRNA:   3'- -GUGUCGCGgcauUGCCGGAgUGGCuC- -5'
19011 3' -57.6 NC_004684.1 + 59423 0.72 0.31316
Target:  5'- gCGCAcGUGCCGccUGGCGGCCUugccCACCGGu -3'
miRNA:   3'- -GUGU-CGCGGC--AUUGCCGGA----GUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 60591 0.72 0.31316
Target:  5'- gACGGCGUCGUAGUGGCCgucguccagugCACCGGc -3'
miRNA:   3'- gUGUCGCGGCAUUGCCGGa----------GUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 25328 0.72 0.320718
Target:  5'- gGCGGCGUa-UGGCGGCCUCcCCGGu -3'
miRNA:   3'- gUGUCGCGgcAUUGCCGGAGuGGCUc -5'
19011 3' -57.6 NC_004684.1 + 60077 0.72 0.328412
Target:  5'- gGCGGC-CCGUGcgGGCCuUCACCGGGc -3'
miRNA:   3'- gUGUCGcGGCAUugCCGG-AGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 58620 0.72 0.328412
Target:  5'- gACGGC-CCGUGGCGGCUggugccgCGCUGGGc -3'
miRNA:   3'- gUGUCGcGGCAUUGCCGGa------GUGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.