miRNA display CGI


Results 1 - 20 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19011 3' -57.6 NC_004684.1 + 44270 0.69 0.469249
Target:  5'- gACGGCGgcacaccacUCGUGcACGGCgUCGCCGAa -3'
miRNA:   3'- gUGUCGC---------GGCAU-UGCCGgAGUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 2186 0.7 0.394792
Target:  5'- cCGCgaGGUGCCGc-ACGGCCacuaCGCCGAGg -3'
miRNA:   3'- -GUG--UCGCGGCauUGCCGGa---GUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 64228 0.7 0.403678
Target:  5'- aCACGGCGuuGgccuCGGCCaggCGCUGGGu -3'
miRNA:   3'- -GUGUCGCggCauu-GCCGGa--GUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 25857 0.7 0.403678
Target:  5'- gGCGGC-CUGUucAACGGCCUCggccagGCCGGGc -3'
miRNA:   3'- gUGUCGcGGCA--UUGCCGGAG------UGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 1210 0.7 0.41269
Target:  5'- gCGCGGCGUCGacuucguCGGCCUCGgCGGc -3'
miRNA:   3'- -GUGUCGCGGCauu----GCCGGAGUgGCUc -5'
19011 3' -57.6 NC_004684.1 + 33618 0.7 0.431081
Target:  5'- gGCAGCGCCGgaucgucgGGCGGCUaccucgUCAgCGAc -3'
miRNA:   3'- gUGUCGCGGCa-------UUGCCGG------AGUgGCUc -5'
19011 3' -57.6 NC_004684.1 + 2554 0.69 0.449942
Target:  5'- uGgAGCGCgCGga--GGCCuUCGCCGAGg -3'
miRNA:   3'- gUgUCGCG-GCauugCCGG-AGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 2682 0.69 0.450897
Target:  5'- -uCAGCGCCGggcaccgcaucccCGGCCUgGCCGGu -3'
miRNA:   3'- guGUCGCGGCauu----------GCCGGAgUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 3002 0.69 0.459542
Target:  5'- uCACcGCGCCGUGcacACaGGUgcugaUCACCGAGg -3'
miRNA:   3'- -GUGuCGCGGCAU---UG-CCGg----AGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 809 0.71 0.386033
Target:  5'- gCACcuCGCCGUGGCGGCCcgCAUgGAc -3'
miRNA:   3'- -GUGucGCGGCAUUGCCGGa-GUGgCUc -5'
19011 3' -57.6 NC_004684.1 + 40094 0.71 0.343403
Target:  5'- cCGCAGCggccgaucucgugGCCGUAgcgggcgcugGCGGCCUCggcACCGAc -3'
miRNA:   3'- -GUGUCG-------------CGGCAU----------UGCCGGAG---UGGCUc -5'
19011 3' -57.6 NC_004684.1 + 66267 0.72 0.335452
Target:  5'- gCGCGGCGUCGUcccagcgGACGGCCacgUugCGGGu -3'
miRNA:   3'- -GUGUCGCGGCA-------UUGCCGGa--GugGCUC- -5'
19011 3' -57.6 NC_004684.1 + 53730 0.76 0.170688
Target:  5'- gCAUGGUGCCGgguucGACGGCCaggaaCACCGAGg -3'
miRNA:   3'- -GUGUCGCGGCa----UUGCCGGa----GUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 37473 0.76 0.175247
Target:  5'- gCACAGCGCCGUAuaggaGGCCUCGuguaCGAc -3'
miRNA:   3'- -GUGUCGCGGCAUug---CCGGAGUg---GCUc -5'
19011 3' -57.6 NC_004684.1 + 55459 0.76 0.175247
Target:  5'- uCGCcaAGCGCgGUGAaGGCCUgGCCGAGg -3'
miRNA:   3'- -GUG--UCGCGgCAUUgCCGGAgUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 48658 0.75 0.204934
Target:  5'- gCACcGCGCCGgagaGGCCuUCACCGGGc -3'
miRNA:   3'- -GUGuCGCGGCauugCCGG-AGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 59423 0.72 0.31316
Target:  5'- gCGCAcGUGCCGccUGGCGGCCUugccCACCGGu -3'
miRNA:   3'- -GUGU-CGCGGC--AUUGCCGGA----GUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 25328 0.72 0.320718
Target:  5'- gGCGGCGUa-UGGCGGCCUCcCCGGu -3'
miRNA:   3'- gUGUCGCGgcAUUGCCGGAGuGGCUc -5'
19011 3' -57.6 NC_004684.1 + 58620 0.72 0.328412
Target:  5'- gACGGC-CCGUGGCGGCUggugccgCGCUGGGc -3'
miRNA:   3'- gUGUCGcGGCAUUGCCGGa------GUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 60077 0.72 0.328412
Target:  5'- gGCGGC-CCGUGcgGGCCuUCACCGGGc -3'
miRNA:   3'- gUGUCGcGGCAUugCCGG-AGUGGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.