miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19011 3' -57.6 NC_004684.1 + 458 0.73 0.2913
Target:  5'- ---cGCGCCGga--GGCCuUCGCCGAGg -3'
miRNA:   3'- guguCGCGGCauugCCGG-AGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 494 0.67 0.571227
Target:  5'- gGCcGCGCCGaa--GGCCgCGCCGAa -3'
miRNA:   3'- gUGuCGCGGCauugCCGGaGUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 544 0.7 0.394792
Target:  5'- -cCAGCGCgGUcgaGGCCgcCACCGAGg -3'
miRNA:   3'- guGUCGCGgCAuugCCGGa-GUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 729 0.69 0.469249
Target:  5'- gGCAcCGCCgGUGACcgGGCCgcCGCCGAGg -3'
miRNA:   3'- gUGUcGCGG-CAUUG--CCGGa-GUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 746 0.66 0.656375
Target:  5'- aCACcGaCGCCcUGGCGGCgCUCcuggacaccGCCGAGg -3'
miRNA:   3'- -GUGuC-GCGGcAUUGCCG-GAG---------UGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 809 0.71 0.386033
Target:  5'- gCACcuCGCCGUGGCGGCCcgCAUgGAc -3'
miRNA:   3'- -GUGucGCGGCAUUGCCGGa-GUGgCUc -5'
19011 3' -57.6 NC_004684.1 + 1210 0.7 0.41269
Target:  5'- gCGCGGCGUCGacuucguCGGCCUCGgCGGc -3'
miRNA:   3'- -GUGUCGCGGCauu----GCCGGAGUgGCUc -5'
19011 3' -57.6 NC_004684.1 + 1603 0.66 0.623288
Target:  5'- gCACGGCaucggucGCCGUGcGCGcGCC-CACCGGc -3'
miRNA:   3'- -GUGUCG-------CGGCAU-UGC-CGGaGUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 1796 0.68 0.519254
Target:  5'- gACGcCGCCGU-GCGGCUcaUgACCGAGg -3'
miRNA:   3'- gUGUcGCGGCAuUGCCGG--AgUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 2186 0.7 0.394792
Target:  5'- cCGCgaGGUGCCGc-ACGGCCacuaCGCCGAGg -3'
miRNA:   3'- -GUG--UCGCGGCauUGCCGGa---GUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 2554 0.69 0.449942
Target:  5'- uGgAGCGCgCGga--GGCCuUCGCCGAGg -3'
miRNA:   3'- gUgUCGCG-GCauugCCGG-AGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 2682 0.69 0.450897
Target:  5'- -uCAGCGCCGggcaccgcaucccCGGCCUgGCCGGu -3'
miRNA:   3'- guGUCGCGGCauu----------GCCGGAgUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 3002 0.69 0.459542
Target:  5'- uCACcGCGCCGUGcacACaGGUgcugaUCACCGAGg -3'
miRNA:   3'- -GUGuCGCGGCAU---UG-CCGg----AGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 4037 0.68 0.539848
Target:  5'- gCAUGGCGaCgGUGGCcuaccGGCCaUCGCCGGGu -3'
miRNA:   3'- -GUGUCGC-GgCAUUG-----CCGG-AGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 6425 0.68 0.538812
Target:  5'- gGCGGCGgCGUGAacgccuuCGcGCUUgGCCGAGg -3'
miRNA:   3'- gUGUCGCgGCAUU-------GC-CGGAgUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 6782 0.66 0.656375
Target:  5'- gACGuGCGCCGggUGAcCGGCCUgcgCACCGuGc -3'
miRNA:   3'- gUGU-CGCGGC--AUU-GCCGGA---GUGGCuC- -5'
19011 3' -57.6 NC_004684.1 + 7453 0.67 0.603026
Target:  5'- gCACAacGCGCaCGUGG-GGCCggaCACCGAc -3'
miRNA:   3'- -GUGU--CGCG-GCAUUgCCGGa--GUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 9017 0.71 0.377404
Target:  5'- gCGCGGUGCCGUGcgggGCGGCa--ACCGGc -3'
miRNA:   3'- -GUGUCGCGGCAU----UGCCGgagUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 10615 0.68 0.529514
Target:  5'- aACuGCcguuGCCGUAugGGCgugCUgGCCGAGg -3'
miRNA:   3'- gUGuCG----CGGCAUugCCG---GAgUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 10792 0.69 0.483013
Target:  5'- gACGGCGucggcaCCGUAGCggcauccggcggcugGGCCgCACCGAGu -3'
miRNA:   3'- gUGUCGC------GGCAUUG---------------CCGGaGUGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.