miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19014 5' -64.2 NC_004684.1 + 42900 1.01 0.000864
Target:  5'- cCCUGCGGCACCGCCC-CGGCGGUAGCg -3'
miRNA:   3'- -GGACGCCGUGGCGGGgGCCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 65650 0.83 0.021014
Target:  5'- -gUGCGG-ACCGCCCUCGGUGGUGGUg -3'
miRNA:   3'- ggACGCCgUGGCGGGGGCCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 11984 0.78 0.049667
Target:  5'- aCCgGCGGCACCGacggcaugaCCCCgcaggacuucgcggCGGCGGUGGCc -3'
miRNA:   3'- -GGaCGCCGUGGC---------GGGG--------------GCCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 22326 0.78 0.052834
Target:  5'- cCCcGUGGC-CCGCCaCCCgguacaGGCGGUGGCg -3'
miRNA:   3'- -GGaCGCCGuGGCGG-GGG------CCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 20754 0.77 0.057262
Target:  5'- aCCgcagGCGGUGCCGUCCaCaccggaGGCGGUGGCc -3'
miRNA:   3'- -GGa---CGCCGUGGCGGG-Gg-----CCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 51490 0.76 0.066863
Target:  5'- aCCUGCGGauggcaccgcccgguCACCGCCgCCUGGCGGgacaccuucuccaggUAGCc -3'
miRNA:   3'- -GGACGCC---------------GUGGCGG-GGGCCGCC---------------AUCG- -5'
19014 5' -64.2 NC_004684.1 + 54520 0.76 0.076776
Target:  5'- uCCc-CGGCGgCGgCCUCGGCGGUGGCg -3'
miRNA:   3'- -GGacGCCGUgGCgGGGGCCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 41409 0.76 0.076776
Target:  5'- aCCgucGCGGUGgCGUCCCCcguGGCGGUGGUg -3'
miRNA:   3'- -GGa--CGCCGUgGCGGGGG---CCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 66460 0.75 0.080952
Target:  5'- --gGCGGCguugucuccacGCCGCCaCCCGGUGGcGGCu -3'
miRNA:   3'- ggaCGCCG-----------UGGCGG-GGGCCGCCaUCG- -5'
19014 5' -64.2 NC_004684.1 + 18321 0.75 0.082901
Target:  5'- cCCUGUuccgcacgccGGUGCCGCCCCCGGagccgacCGGcGGCg -3'
miRNA:   3'- -GGACG----------CCGUGGCGGGGGCC-------GCCaUCG- -5'
19014 5' -64.2 NC_004684.1 + 47275 0.75 0.08312
Target:  5'- uUCU-UGGUGCCGCCgCCCaGCGGUGGCu -3'
miRNA:   3'- -GGAcGCCGUGGCGG-GGGcCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 10386 0.75 0.085344
Target:  5'- cCCgaugGC-GCGCuCGUCCCCGGCGGUGacGCg -3'
miRNA:   3'- -GGa---CGcCGUG-GCGGGGGCCGCCAU--CG- -5'
19014 5' -64.2 NC_004684.1 + 29560 0.75 0.089963
Target:  5'- uUCUGgGGcCGCUGCCUUacaaGGCGGUGGCc -3'
miRNA:   3'- -GGACgCC-GUGGCGGGGg---CCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 61315 0.74 0.099921
Target:  5'- aCCgccGCcgGGcCGCCGCCCUCGGCGGcguaggUGGCg -3'
miRNA:   3'- -GGa--CG--CC-GUGGCGGGGGCCGCC------AUCG- -5'
19014 5' -64.2 NC_004684.1 + 57140 0.74 0.099921
Target:  5'- --cGCGGCugguUCGCCUCCauggcGGCGGUGGCc -3'
miRNA:   3'- ggaCGCCGu---GGCGGGGG-----CCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 49039 0.74 0.099921
Target:  5'- --aGCGGCACCGCgCCgCCGGuCGGcuccgggGGCg -3'
miRNA:   3'- ggaCGCCGUGGCG-GG-GGCC-GCCa------UCG- -5'
19014 5' -64.2 NC_004684.1 + 24757 0.74 0.102569
Target:  5'- gCUgGCGGCACCaGCa-CCGGCGGcGGCg -3'
miRNA:   3'- gGA-CGCCGUGG-CGggGGCCGCCaUCG- -5'
19014 5' -64.2 NC_004684.1 + 67366 0.74 0.102569
Target:  5'- aCCccUGGUACCGCCCCCGGUGuccGGCu -3'
miRNA:   3'- -GGacGCCGUGGCGGGGGCCGCca-UCG- -5'
19014 5' -64.2 NC_004684.1 + 26597 0.74 0.105283
Target:  5'- --cGCGGguUCGCCaCCGGCGGcGGCg -3'
miRNA:   3'- ggaCGCCguGGCGGgGGCCGCCaUCG- -5'
19014 5' -64.2 NC_004684.1 + 33495 0.74 0.105283
Target:  5'- --cGCGGCGgCGgCCCUguacucgcgGGCGGUGGCg -3'
miRNA:   3'- ggaCGCCGUgGCgGGGG---------CCGCCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.