miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19014 5' -64.2 NC_004684.1 + 23574 0.72 0.139902
Target:  5'- gCCUGcCGGgccgcgcgaaCACCGCCgCCGGUGGUAu- -3'
miRNA:   3'- -GGAC-GCC----------GUGGCGGgGGCCGCCAUcg -5'
19014 5' -64.2 NC_004684.1 + 33495 0.74 0.105283
Target:  5'- --cGCGGCGgCGgCCCUguacucgcgGGCGGUGGCg -3'
miRNA:   3'- ggaCGCCGUgGCgGGGG---------CCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 24204 0.73 0.113834
Target:  5'- gCCUGCGGUgcccgacaucgcGCCGagcgaCCUCGGCGGUcuGCu -3'
miRNA:   3'- -GGACGCCG------------UGGCg----GGGGCCGCCAu-CG- -5'
19014 5' -64.2 NC_004684.1 + 38807 0.73 0.119891
Target:  5'- uCCaGCGGCGgUGCCCgCCuGGCGGU-GCc -3'
miRNA:   3'- -GGaCGCCGUgGCGGG-GG-CCGCCAuCG- -5'
19014 5' -64.2 NC_004684.1 + 35795 0.73 0.12303
Target:  5'- --cGUGGCGCaGUCCCCGGCgacGGUGGUc -3'
miRNA:   3'- ggaCGCCGUGgCGGGGGCCG---CCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 22190 0.73 0.126246
Target:  5'- --gGCGGCgACCGCCUUCGGacuggcgcaGGUGGCc -3'
miRNA:   3'- ggaCGCCG-UGGCGGGGGCCg--------CCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 66511 0.73 0.126246
Target:  5'- gCCUcGCGG-GCCGCCuucagcgcggCCCGGCGGgcacGGCg -3'
miRNA:   3'- -GGA-CGCCgUGGCGG----------GGGCCGCCa---UCG- -5'
19014 5' -64.2 NC_004684.1 + 54895 0.72 0.132913
Target:  5'- aCgUGCGGCACgaggCGgCCCUGGUGGccgAGCg -3'
miRNA:   3'- -GgACGCCGUG----GCgGGGGCCGCCa--UCG- -5'
19014 5' -64.2 NC_004684.1 + 44164 0.72 0.136366
Target:  5'- aCUGCGGCACgGCgaugaaCCCGGCGcGcgccAGCa -3'
miRNA:   3'- gGACGCCGUGgCGg-----GGGCCGC-Ca---UCG- -5'
19014 5' -64.2 NC_004684.1 + 26597 0.74 0.105283
Target:  5'- --cGCGGguUCGCCaCCGGCGGcGGCg -3'
miRNA:   3'- ggaCGCCguGGCGGgGGCCGCCaUCG- -5'
19014 5' -64.2 NC_004684.1 + 67366 0.74 0.102569
Target:  5'- aCCccUGGUACCGCCCCCGGUGuccGGCu -3'
miRNA:   3'- -GGacGCCGUGGCGGGGGCCGCca-UCG- -5'
19014 5' -64.2 NC_004684.1 + 61315 0.74 0.099921
Target:  5'- aCCgccGCcgGGcCGCCGCCCUCGGCGGcguaggUGGCg -3'
miRNA:   3'- -GGa--CG--CC-GUGGCGGGGGCCGCC------AUCG- -5'
19014 5' -64.2 NC_004684.1 + 22326 0.78 0.052834
Target:  5'- cCCcGUGGC-CCGCCaCCCgguacaGGCGGUGGCg -3'
miRNA:   3'- -GGaCGCCGuGGCGG-GGG------CCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 20754 0.77 0.057262
Target:  5'- aCCgcagGCGGUGCCGUCCaCaccggaGGCGGUGGCc -3'
miRNA:   3'- -GGa---CGCCGUGGCGGG-Gg-----CCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 51490 0.76 0.066863
Target:  5'- aCCUGCGGauggcaccgcccgguCACCGCCgCCUGGCGGgacaccuucuccaggUAGCc -3'
miRNA:   3'- -GGACGCC---------------GUGGCGG-GGGCCGCC---------------AUCG- -5'
19014 5' -64.2 NC_004684.1 + 41409 0.76 0.076776
Target:  5'- aCCgucGCGGUGgCGUCCCCcguGGCGGUGGUg -3'
miRNA:   3'- -GGa--CGCCGUgGCGGGGG---CCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 66460 0.75 0.080952
Target:  5'- --gGCGGCguugucuccacGCCGCCaCCCGGUGGcGGCu -3'
miRNA:   3'- ggaCGCCG-----------UGGCGG-GGGCCGCCaUCG- -5'
19014 5' -64.2 NC_004684.1 + 18321 0.75 0.082901
Target:  5'- cCCUGUuccgcacgccGGUGCCGCCCCCGGagccgacCGGcGGCg -3'
miRNA:   3'- -GGACG----------CCGUGGCGGGGGCC-------GCCaUCG- -5'
19014 5' -64.2 NC_004684.1 + 29560 0.75 0.089963
Target:  5'- uUCUGgGGcCGCUGCCUUacaaGGCGGUGGCc -3'
miRNA:   3'- -GGACgCC-GUGGCGGGGg---CCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 57140 0.74 0.099921
Target:  5'- --cGCGGCugguUCGCCUCCauggcGGCGGUGGCc -3'
miRNA:   3'- ggaCGCCGu---GGCGGGGG-----CCGCCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.