miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19014 5' -64.2 NC_004684.1 + 1239 0.68 0.255864
Target:  5'- gCCUGguCGGuCGcCCGgCCCCGGCccagaugcgcuggcuGGUGGCc -3'
miRNA:   3'- -GGAC--GCC-GU-GGCgGGGGCCG---------------CCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 1592 0.68 0.281095
Target:  5'- aCCUGCccggugcacGGCAUcggucgccgugcgcgCGCCCaCCGGCGcGcGGCg -3'
miRNA:   3'- -GGACG---------CCGUG---------------GCGGG-GGCCGC-CaUCG- -5'
19014 5' -64.2 NC_004684.1 + 2049 0.67 0.291727
Target:  5'- cCCUG-GGgGCCGCCaucguggccugCCUGGCGcUGGCc -3'
miRNA:   3'- -GGACgCCgUGGCGG-----------GGGCCGCcAUCG- -5'
19014 5' -64.2 NC_004684.1 + 2530 0.67 0.319676
Target:  5'- aCUGCGGaCGCUGCggcaCCUGcGUGG-AGCg -3'
miRNA:   3'- gGACGCC-GUGGCGg---GGGC-CGCCaUCG- -5'
19014 5' -64.2 NC_004684.1 + 2686 0.67 0.319676
Target:  5'- --cGCcgGGCACCGCauCCCCGGCcuggccggugccGGgGGCa -3'
miRNA:   3'- ggaCG--CCGUGGCG--GGGGCCG------------CCaUCG- -5'
19014 5' -64.2 NC_004684.1 + 2953 0.66 0.378981
Target:  5'- uCCgGCGcGCACaucgagaccaucggUGCCCUggaCGGCGGgGGCg -3'
miRNA:   3'- -GGaCGC-CGUG--------------GCGGGG---GCCGCCaUCG- -5'
19014 5' -64.2 NC_004684.1 + 3031 0.68 0.253445
Target:  5'- aCCga-GGgGCCGCacaacgaggCCCgGGUGGUGGCg -3'
miRNA:   3'- -GGacgCCgUGGCG---------GGGgCCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 3632 0.67 0.312505
Target:  5'- gCUGuCGGCcgcaaacuagugGCCGCCCggugCCGGgucaucguaCGGUGGCc -3'
miRNA:   3'- gGAC-GCCG------------UGGCGGG----GGCC---------GCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 3879 0.66 0.373294
Target:  5'- gCUGCGacGCcagGCCGCCCugCUGGCGcaGGCg -3'
miRNA:   3'- gGACGC--CG---UGGCGGG--GGCCGCcaUCG- -5'
19014 5' -64.2 NC_004684.1 + 4152 0.67 0.329922
Target:  5'- --cGCGGaCACCguggacgcgaucaugGCCcgguugcgCCCGGCGGgcGCg -3'
miRNA:   3'- ggaCGCC-GUGG---------------CGG--------GGGCCGCCauCG- -5'
19014 5' -64.2 NC_004684.1 + 4582 0.68 0.285046
Target:  5'- gCUGCuGCACuCGCCaCCCGGUGugacGCg -3'
miRNA:   3'- gGACGcCGUG-GCGG-GGGCCGCcau-CG- -5'
19014 5' -64.2 NC_004684.1 + 5473 0.66 0.349586
Target:  5'- gCC-GUGGC-CCGCaCCCCGcGauagaGGUGGUu -3'
miRNA:   3'- -GGaCGCCGuGGCG-GGGGC-Cg----CCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 5886 0.66 0.378981
Target:  5'- aCUGCuGGCgcgcaucgagcGCCGCCgCCUGcGCGGcgacaucgacuaggUGGCa -3'
miRNA:   3'- gGACG-CCG-----------UGGCGG-GGGC-CGCC--------------AUCG- -5'
19014 5' -64.2 NC_004684.1 + 6088 0.68 0.259527
Target:  5'- cCCggcgGCGGUGCUGCCggaaaucgaCCCGGCGc-AGCu -3'
miRNA:   3'- -GGa---CGCCGUGGCGG---------GGGCCGCcaUCG- -5'
19014 5' -64.2 NC_004684.1 + 6159 0.68 0.285046
Target:  5'- aCgGCGGCgGCCaGCgUgCGGCGGUAGg -3'
miRNA:   3'- gGaCGCCG-UGG-CGgGgGCCGCCAUCg -5'
19014 5' -64.2 NC_004684.1 + 7524 0.71 0.15887
Target:  5'- aCCUGCccGGCACCGa-CCUGGCcgccGUGGCg -3'
miRNA:   3'- -GGACG--CCGUGGCggGGGCCGc---CAUCG- -5'
19014 5' -64.2 NC_004684.1 + 7550 0.66 0.381435
Target:  5'- --cGCGGUgcuggACCGgCCCCG--GGUGGCg -3'
miRNA:   3'- ggaCGCCG-----UGGCgGGGGCcgCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 9446 0.66 0.341925
Target:  5'- gCCgcaGCGaGCACCGCa---GGCGGUcGGCa -3'
miRNA:   3'- -GGa--CGC-CGUGGCGggggCCGCCA-UCG- -5'
19014 5' -64.2 NC_004684.1 + 9871 0.66 0.349586
Target:  5'- --gGCGGgcCACCGCCUcgggauCCGGCGcaGGCa -3'
miRNA:   3'- ggaCGCC--GUGGCGGG------GGCCGCcaUCG- -5'
19014 5' -64.2 NC_004684.1 + 10143 0.67 0.319676
Target:  5'- gCC-GaCGGUGCCGCCCgCCcaGGUGG-GGCg -3'
miRNA:   3'- -GGaC-GCCGUGGCGGG-GG--CCGCCaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.