miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19016 3' -63.4 NC_004684.1 + 57297 0.66 0.374076
Target:  5'- aGCCGcaccccGGcCa-GCCCUGCCCGGUc -3'
miRNA:   3'- gCGGCau----CCaGcgCGGGACGGGCCAu -5'
19016 3' -63.4 NC_004684.1 + 55030 0.66 0.365907
Target:  5'- aGCCGaAGGUggugcgcagUGUGCCCaGCgCGGUGa -3'
miRNA:   3'- gCGGCaUCCA---------GCGCGGGaCGgGCCAU- -5'
19016 3' -63.4 NC_004684.1 + 55573 0.66 0.357862
Target:  5'- uCGCCGgacagcGGcgcgcUCGCGCCCUucuccacggugGCCUGGUc -3'
miRNA:   3'- -GCGGCau----CC-----AGCGCGGGA-----------CGGGCCAu -5'
19016 3' -63.4 NC_004684.1 + 36760 0.66 0.357862
Target:  5'- aCGCCGccaGGGcCGCGCCCggUGCCgacgcUGGUc -3'
miRNA:   3'- -GCGGCa--UCCaGCGCGGG--ACGG-----GCCAu -5'
19016 3' -63.4 NC_004684.1 + 28374 0.66 0.357064
Target:  5'- aGCCGUagAGGUCGauaccgaCGCCgUGCgugacgCCGGUGu -3'
miRNA:   3'- gCGGCA--UCCAGC-------GCGGgACG------GGCCAU- -5'
19016 3' -63.4 NC_004684.1 + 31943 0.66 0.349941
Target:  5'- gGCCGcaacGGUCGC-CCgCUGUCCGGc- -3'
miRNA:   3'- gCGGCau--CCAGCGcGG-GACGGGCCau -5'
19016 3' -63.4 NC_004684.1 + 51180 0.66 0.342146
Target:  5'- gCGCCGggccauGGaccgCGCGCCCUGgCCGu-- -3'
miRNA:   3'- -GCGGCau----CCa---GCGCGGGACgGGCcau -5'
19016 3' -63.4 NC_004684.1 + 58325 0.66 0.342146
Target:  5'- aCGCCGggucauGG-CGCGCCCggugGCCCu--- -3'
miRNA:   3'- -GCGGCau----CCaGCGCGGGa---CGGGccau -5'
19016 3' -63.4 NC_004684.1 + 9849 0.66 0.339832
Target:  5'- aGCuCGgcGGUCGCGCUCUggaggcgggccaccGCCuCGGg- -3'
miRNA:   3'- gCG-GCauCCAGCGCGGGA--------------CGG-GCCau -5'
19016 3' -63.4 NC_004684.1 + 26420 0.67 0.326935
Target:  5'- gCGCUGgcagcgGGGuUCGcCGCCggugGCCCGGUGu -3'
miRNA:   3'- -GCGGCa-----UCC-AGC-GCGGga--CGGGCCAU- -5'
19016 3' -63.4 NC_004684.1 + 45256 0.67 0.319519
Target:  5'- aGCCagcgcuGGUCGCgGCCCUugcGUCCGGUu -3'
miRNA:   3'- gCGGcau---CCAGCG-CGGGA---CGGGCCAu -5'
19016 3' -63.4 NC_004684.1 + 37630 0.67 0.319519
Target:  5'- aCGCCGUcGGUgCGCugGCCauggccGCCCGGUc -3'
miRNA:   3'- -GCGGCAuCCA-GCG--CGGga----CGGGCCAu -5'
19016 3' -63.4 NC_004684.1 + 66206 0.67 0.31223
Target:  5'- uGCCGUAGuaGUCcaGCGCCUgcgGCUCGGc- -3'
miRNA:   3'- gCGGCAUC--CAG--CGCGGGa--CGGGCCau -5'
19016 3' -63.4 NC_004684.1 + 64861 0.67 0.31223
Target:  5'- uGUgGUGGGgggUGCGCgUUGUCCGGUc -3'
miRNA:   3'- gCGgCAUCCa--GCGCGgGACGGGCCAu -5'
19016 3' -63.4 NC_004684.1 + 15063 0.67 0.31223
Target:  5'- aCGCCGgaugAGGUCGaCGgCCUuaucgGCgCGGUGg -3'
miRNA:   3'- -GCGGCa---UCCAGC-GCgGGA-----CGgGCCAU- -5'
19016 3' -63.4 NC_004684.1 + 22527 0.67 0.305069
Target:  5'- aCGCagGcAGGcCuCGCUCUGCCCGGUGu -3'
miRNA:   3'- -GCGg-CaUCCaGcGCGGGACGGGCCAU- -5'
19016 3' -63.4 NC_004684.1 + 65668 0.67 0.305069
Target:  5'- gGUgGUgAGGUCGCGgCaCUGgCCGGUGc -3'
miRNA:   3'- gCGgCA-UCCAGCGCgG-GACgGGCCAU- -5'
19016 3' -63.4 NC_004684.1 + 1573 0.67 0.298034
Target:  5'- cCGCCGgugccuccGGGUCa---CCUGCCCGGUGc -3'
miRNA:   3'- -GCGGCa-------UCCAGcgcgGGACGGGCCAU- -5'
19016 3' -63.4 NC_004684.1 + 20226 0.67 0.298034
Target:  5'- uCGCC-UGGGU-GCGCCUggcGCgCCGGUAc -3'
miRNA:   3'- -GCGGcAUCCAgCGCGGGa--CG-GGCCAU- -5'
19016 3' -63.4 NC_004684.1 + 61194 0.67 0.291125
Target:  5'- gCGCCGgAGGccaUCGacauGUaCCUGCCCGGUGc -3'
miRNA:   3'- -GCGGCaUCC---AGCg---CG-GGACGGGCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.