miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19016 5' -55.7 NC_004684.1 + 61827 0.66 0.771426
Target:  5'- -aUUUCGcGCGcGCcCACCGUgaGGGCAa -3'
miRNA:   3'- cgAGAGCuUGC-CGuGUGGCAa-CCCGU- -5'
19016 5' -55.7 NC_004684.1 + 34147 0.66 0.741117
Target:  5'- cGC-CUCGGGCGGCACGgUGcUGcucaccGGCAc -3'
miRNA:   3'- -CGaGAGCUUGCCGUGUgGCaAC------CCGU- -5'
19016 5' -55.7 NC_004684.1 + 39600 0.66 0.730787
Target:  5'- aGgaC-CGAACcgccGCGCACCGUcGGGCGg -3'
miRNA:   3'- -CgaGaGCUUGc---CGUGUGGCAaCCCGU- -5'
19016 5' -55.7 NC_004684.1 + 43878 0.66 0.730787
Target:  5'- cGC-CaUGuuCGGCGCAUCGcUGGGCAg -3'
miRNA:   3'- -CGaGaGCuuGCCGUGUGGCaACCCGU- -5'
19016 5' -55.7 NC_004684.1 + 1991 0.66 0.730787
Target:  5'- --gCUCGAACuGCugGCC--UGGGCGc -3'
miRNA:   3'- cgaGAGCUUGcCGugUGGcaACCCGU- -5'
19016 5' -55.7 NC_004684.1 + 14916 0.66 0.729749
Target:  5'- cGCgCUgGAgguggugGCGGcCAUGCCGUcGGGCAu -3'
miRNA:   3'- -CGaGAgCU-------UGCC-GUGUGGCAaCCCGU- -5'
19016 5' -55.7 NC_004684.1 + 66327 0.66 0.720362
Target:  5'- aGCgCUCGAAcguccCGGUgACGCCGgggcGGGCGg -3'
miRNA:   3'- -CGaGAGCUU-----GCCG-UGUGGCaa--CCCGU- -5'
19016 5' -55.7 NC_004684.1 + 1385 0.66 0.720362
Target:  5'- aGCUCcgggUgGGGCGGCGgcUACCGguacGGGCGg -3'
miRNA:   3'- -CGAG----AgCUUGCCGU--GUGGCaa--CCCGU- -5'
19016 5' -55.7 NC_004684.1 + 38606 0.67 0.69927
Target:  5'- aGCUCggaacCGggUGGCAUGCCGcugaccUGGaGCGg -3'
miRNA:   3'- -CGAGa----GCuuGCCGUGUGGCa-----ACC-CGU- -5'
19016 5' -55.7 NC_004684.1 + 32954 0.67 0.677927
Target:  5'- gGCcgCUCGGGCaGCACACUGcuguccucGGGCGc -3'
miRNA:   3'- -CGa-GAGCUUGcCGUGUGGCaa------CCCGU- -5'
19016 5' -55.7 NC_004684.1 + 25398 0.67 0.667187
Target:  5'- gGUUgUCGccAGCGGC-CACCGcgcGGGCAu -3'
miRNA:   3'- -CGAgAGC--UUGCCGuGUGGCaa-CCCGU- -5'
19016 5' -55.7 NC_004684.1 + 16622 0.68 0.656416
Target:  5'- cGCg--CGGACauGGgACACCGaUGGGCGa -3'
miRNA:   3'- -CGagaGCUUG--CCgUGUGGCaACCCGU- -5'
19016 5' -55.7 NC_004684.1 + 49033 0.68 0.654259
Target:  5'- -aUgUCGAGCGGCACcgcgccGCCGgucggcuccggGGGCGg -3'
miRNA:   3'- cgAgAGCUUGCCGUG------UGGCaa---------CCCGU- -5'
19016 5' -55.7 NC_004684.1 + 24749 0.68 0.645623
Target:  5'- cGCUCaUCGcuGGCGGCaccaGCACCGgcgGcGGCGg -3'
miRNA:   3'- -CGAG-AGC--UUGCCG----UGUGGCaa-C-CCGU- -5'
19016 5' -55.7 NC_004684.1 + 38501 0.68 0.645623
Target:  5'- gGCggUCGccACGGCGCGCCGUUcGGUg -3'
miRNA:   3'- -CGagAGCu-UGCCGUGUGGCAAcCCGu -5'
19016 5' -55.7 NC_004684.1 + 46160 0.68 0.634818
Target:  5'- cUUCUCGuuGCGGUACAUCGU--GGCGg -3'
miRNA:   3'- cGAGAGCu-UGCCGUGUGGCAacCCGU- -5'
19016 5' -55.7 NC_004684.1 + 9526 0.68 0.633737
Target:  5'- aGCUCUccgaccgCGAGCuGGUGCGCCgGUUGGaGCc -3'
miRNA:   3'- -CGAGA-------GCUUG-CCGUGUGG-CAACC-CGu -5'
19016 5' -55.7 NC_004684.1 + 51312 0.68 0.62401
Target:  5'- aGUcCUCGuuCGGCuCACCGgcGGGCc -3'
miRNA:   3'- -CGaGAGCuuGCCGuGUGGCaaCCCGu -5'
19016 5' -55.7 NC_004684.1 + 60039 0.69 0.591665
Target:  5'- cGUUCUCc-ACGGCgcGCACCGgcGGGUu -3'
miRNA:   3'- -CGAGAGcuUGCCG--UGUGGCaaCCCGu -5'
19016 5' -55.7 NC_004684.1 + 30964 0.69 0.579867
Target:  5'- cGCUgUgGAACGGCguggucgGCACCGUUGagacgcugauGGCGc -3'
miRNA:   3'- -CGAgAgCUUGCCG-------UGUGGCAAC----------CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.