Results 1 - 20 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19040 | 3' | -62.6 | NC_004684.1 | + | 54453 | 0.65 | 0.440559 |
Target: 5'- aCCGGG-GGUGCCGacggcggcgaaguuGGccgACGGCGCaCCGg -3' miRNA: 3'- -GGCCCgCCGUGGU--------------CCa--UGCCGUG-GGU- -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 65347 | 0.65 | 0.440559 |
Target: 5'- aCGauGGCGGCccccagggccACCAGGgcgACGGUcaucgcggacccccACCCAg -3' miRNA: 3'- gGC--CCGCCG----------UGGUCCa--UGCCG--------------UGGGU- -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 29213 | 0.65 | 0.441468 |
Target: 5'- gUGGGaCGGCaacgGCCAGGacaugcuguggcGCGGC-CCCAu -3' miRNA: 3'- gGCCC-GCCG----UGGUCCa-----------UGCCGuGGGU- -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 9209 | 0.66 | 0.390561 |
Target: 5'- gUGGGCGcGUgACCGGGUG-GGCcaggACCCGa -3' miRNA: 3'- gGCCCGC-CG-UGGUCCAUgCCG----UGGGU- -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 43765 | 0.66 | 0.416416 |
Target: 5'- aCCGGcGUGGUcagGCCGGGUACGucGUGCUUg -3' miRNA: 3'- -GGCC-CGCCG---UGGUCCAUGC--CGUGGGu -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 8620 | 0.66 | 0.416416 |
Target: 5'- cCCGGuGCaccGGCACCGccgauccuCGGCACCCc -3' miRNA: 3'- -GGCC-CG---CCGUGGUccau----GCCGUGGGu -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 30043 | 0.66 | 0.416416 |
Target: 5'- aCCGGG-GGCgauccugugaGCCuGGUAcCGGCcuCCCGg -3' miRNA: 3'- -GGCCCgCCG----------UGGuCCAU-GCCGu-GGGU- -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 33475 | 0.66 | 0.416416 |
Target: 5'- uCgGcGGCGGCugCGGuGgacgcgGCGGCgGCCCu -3' miRNA: 3'- -GgC-CCGCCGugGUC-Ca-----UGCCG-UGGGu -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 9794 | 0.66 | 0.390561 |
Target: 5'- gCCGaGGCccuGCGCCGG---UGGCACCCGa -3' miRNA: 3'- -GGC-CCGc--CGUGGUCcauGCCGUGGGU- -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 47330 | 0.66 | 0.431524 |
Target: 5'- gCCGGuGUGGgcgucgagcauggcCACCAGGccACGGUaggACCCGg -3' miRNA: 3'- -GGCC-CGCC--------------GUGGUCCa-UGCCG---UGGGU- -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 21249 | 0.66 | 0.389718 |
Target: 5'- gCGaGGUGuucguGCGCCAGGUcaaccaccccggcACGcGCGCCCGg -3' miRNA: 3'- gGC-CCGC-----CGUGGUCCA-------------UGC-CGUGGGU- -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 48680 | 0.66 | 0.434223 |
Target: 5'- aCCGGGCauguagaGCACUuuggucuugAGcGUGCGGCgGCCCu -3' miRNA: 3'- -GGCCCGc------CGUGG---------UC-CAUGCCG-UGGGu -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 28082 | 0.66 | 0.40422 |
Target: 5'- gCCGGGCcgccgcgcgacccGCACCGGGUgguGCGGUucgagGCCUu -3' miRNA: 3'- -GGCCCGc------------CGUGGUCCA---UGCCG-----UGGGu -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 25560 | 0.66 | 0.407681 |
Target: 5'- cUCGGcGCGGUGgaAGGUGCGcUACCCGg -3' miRNA: 3'- -GGCC-CGCCGUggUCCAUGCcGUGGGU- -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 66483 | 0.66 | 0.425264 |
Target: 5'- aCCcGGUGGCgGCUAGGccuugGCGGCGgCCu -3' miRNA: 3'- -GGcCCGCCG-UGGUCCa----UGCCGUgGGu -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 60353 | 0.66 | 0.434223 |
Target: 5'- uUCGGccaGCGGUGCCaggucggucAGGUugGGCAUgCCGg -3' miRNA: 3'- -GGCC---CGCCGUGG---------UCCAugCCGUG-GGU- -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 64852 | 0.66 | 0.399063 |
Target: 5'- gCGGGUGGUugUggugggGGGUGCGcguuguccggucGCGCCCc -3' miRNA: 3'- gGCCCGCCGugG------UCCAUGC------------CGUGGGu -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 45777 | 0.66 | 0.433322 |
Target: 5'- gCCGGuGCGGUACCGGucguagaccuGUucgcgcucggcguGCGGCauugACCCGg -3' miRNA: 3'- -GGCC-CGCCGUGGUC----------CA-------------UGCCG----UGGGU- -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 64916 | 0.66 | 0.424374 |
Target: 5'- uCUuGGCGGCGacCCAGGUgGCGGCggugagcGCCUg -3' miRNA: 3'- -GGcCCGCCGU--GGUCCA-UGCCG-------UGGGu -5' |
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19040 | 3' | -62.6 | NC_004684.1 | + | 59513 | 0.66 | 0.416416 |
Target: 5'- aCCGGGCGcgucguaggccuGCGCaCAGGUccugcaccgccaGCGcGCGCCg- -3' miRNA: 3'- -GGCCCGC------------CGUG-GUCCA------------UGC-CGUGGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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