miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19040 3' -62.6 NC_004684.1 + 32157 1.09 0.000275
Target:  5'- aCCGGGCGGCACCAGGUACGGCACCCAc -3'
miRNA:   3'- -GGCCCGCCGUGGUCCAUGCCGUGGGU- -5'
19040 3' -62.6 NC_004684.1 + 7567 0.81 0.040247
Target:  5'- cCCGGGUGGCGCU-GGUGCGGCuggugcgcggcaACCCGg -3'
miRNA:   3'- -GGCCCGCCGUGGuCCAUGCCG------------UGGGU- -5'
19040 3' -62.6 NC_004684.1 + 19552 0.79 0.055845
Target:  5'- gCCGGGCGGUGCCAGGUcuccgggccugGCGucguGCACCUg -3'
miRNA:   3'- -GGCCCGCCGUGGUCCA-----------UGC----CGUGGGu -5'
19040 3' -62.6 NC_004684.1 + 43250 0.76 0.085979
Target:  5'- aCCGGaGCGGUGCgcagCGGGUACGGCugCUg -3'
miRNA:   3'- -GGCC-CGCCGUG----GUCCAUGCCGugGGu -5'
19040 3' -62.6 NC_004684.1 + 43457 0.75 0.10358
Target:  5'- gCGGGCgcGGCAgCAGGUGCGGCGgCa- -3'
miRNA:   3'- gGCCCG--CCGUgGUCCAUGCCGUgGgu -5'
19040 3' -62.6 NC_004684.1 + 49053 0.75 0.10358
Target:  5'- gCCGGuCGGCuCCGGGgGCGGCACCg- -3'
miRNA:   3'- -GGCCcGCCGuGGUCCaUGCCGUGGgu -5'
19040 3' -62.6 NC_004684.1 + 3444 0.75 0.106356
Target:  5'- aCCGuGGC--CAUguGGUACGGCACCCAg -3'
miRNA:   3'- -GGC-CCGccGUGguCCAUGCCGUGGGU- -5'
19040 3' -62.6 NC_004684.1 + 1632 0.75 0.106356
Target:  5'- aCCGGcGCa--ACCGGGUAcCGGCGCCCAa -3'
miRNA:   3'- -GGCC-CGccgUGGUCCAU-GCCGUGGGU- -5'
19040 3' -62.6 NC_004684.1 + 1470 0.75 0.109202
Target:  5'- aCCGGGcCGGacguGCCcGGUGCGGCgGCCCu -3'
miRNA:   3'- -GGCCC-GCCg---UGGuCCAUGCCG-UGGGu -5'
19040 3' -62.6 NC_004684.1 + 9891 0.74 0.115109
Target:  5'- uCCGGcGCaGGCACCuGcGUGCGGCGCUUg -3'
miRNA:   3'- -GGCC-CG-CCGUGGuC-CAUGCCGUGGGu -5'
19040 3' -62.6 NC_004684.1 + 24839 0.74 0.124532
Target:  5'- -aGGGCGGCagcgguagcgccACCGGGccguuCGGCACCCc -3'
miRNA:   3'- ggCCCGCCG------------UGGUCCau---GCCGUGGGu -5'
19040 3' -62.6 NC_004684.1 + 45068 0.73 0.14147
Target:  5'- aCCGGGUGGCggGCCacggggagcaucgGGGUuCGGCACCg- -3'
miRNA:   3'- -GGCCCGCCG--UGG-------------UCCAuGCCGUGGgu -5'
19040 3' -62.6 NC_004684.1 + 33516 0.73 0.15325
Target:  5'- gCGGGCGGUggcggcuauGCgGGGUcguACGGCACCg- -3'
miRNA:   3'- gGCCCGCCG---------UGgUCCA---UGCCGUGGgu -5'
19040 3' -62.6 NC_004684.1 + 25817 0.73 0.15325
Target:  5'- gCCGGGUGGCgGCCAGa-ACGGCAUCg- -3'
miRNA:   3'- -GGCCCGCCG-UGGUCcaUGCCGUGGgu -5'
19040 3' -62.6 NC_004684.1 + 315 0.73 0.15325
Target:  5'- gCCGaGGCcaacgcccGCACCGGGUACGGCGCg-- -3'
miRNA:   3'- -GGC-CCGc-------CGUGGUCCAUGCCGUGggu -5'
19040 3' -62.6 NC_004684.1 + 20361 0.72 0.161316
Target:  5'- -gGGGCGGCuacugcgaagGCCAGucguuccccgACGGCACCCGg -3'
miRNA:   3'- ggCCCGCCG----------UGGUCca--------UGCCGUGGGU- -5'
19040 3' -62.6 NC_004684.1 + 10090 0.72 0.161316
Target:  5'- aCCGGGCagGGCugGCCgGGGUGCGGCucGCCg- -3'
miRNA:   3'- -GGCCCG--CCG--UGG-UCCAUGCCG--UGGgu -5'
19040 3' -62.6 NC_004684.1 + 13701 0.72 0.169763
Target:  5'- aCCGGuCGGCcaACCAGGUGuucCGGCccACCCGu -3'
miRNA:   3'- -GGCCcGCCG--UGGUCCAU---GCCG--UGGGU- -5'
19040 3' -62.6 NC_004684.1 + 9658 0.72 0.169763
Target:  5'- uCCGGGCGGCggugaagcGCgCGGuGUACGGCGagcugaCCAa -3'
miRNA:   3'- -GGCCCGCCG--------UG-GUC-CAUGCCGUg-----GGU- -5'
19040 3' -62.6 NC_004684.1 + 7415 0.72 0.169763
Target:  5'- gCGuGCGGCAagguCCGGGUGCGGCACg-- -3'
miRNA:   3'- gGCcCGCCGU----GGUCCAUGCCGUGggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.