miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19040 3' -62.6 NC_004684.1 + 32 0.7 0.229142
Target:  5'- -gGGGCGGUACCAGG---GGUcCCCGa -3'
miRNA:   3'- ggCCCGCCGUGGUCCaugCCGuGGGU- -5'
19040 3' -62.6 NC_004684.1 + 315 0.73 0.15325
Target:  5'- gCCGaGGCcaacgcccGCACCGGGUACGGCGCg-- -3'
miRNA:   3'- -GGC-CCGc-------CGUGGUCCAUGCCGUGggu -5'
19040 3' -62.6 NC_004684.1 + 325 0.71 0.187377
Target:  5'- aCCGGGCGGCccaACgAGGUguugGCGGgcaaccaCACCCu -3'
miRNA:   3'- -GGCCCGCCG---UGgUCCA----UGCC-------GUGGGu -5'
19040 3' -62.6 NC_004684.1 + 402 0.68 0.305147
Target:  5'- gCCGuGGCGGgcaaGCUGGGcgACuGGCACCCc -3'
miRNA:   3'- -GGC-CCGCCg---UGGUCCa-UG-CCGUGGGu -5'
19040 3' -62.6 NC_004684.1 + 1034 0.68 0.298134
Target:  5'- gCGGcGUGGgGCCAGaaaugGCGGCACCg- -3'
miRNA:   3'- gGCC-CGCCgUGGUCca---UGCCGUGGgu -5'
19040 3' -62.6 NC_004684.1 + 1470 0.75 0.109202
Target:  5'- aCCGGGcCGGacguGCCcGGUGCGGCgGCCCu -3'
miRNA:   3'- -GGCCC-GCCg---UGGuCCAUGCCG-UGGGu -5'
19040 3' -62.6 NC_004684.1 + 1535 0.67 0.357762
Target:  5'- uCCGaGGUGGcCACCA---GCGGCcCCCAc -3'
miRNA:   3'- -GGC-CCGCC-GUGGUccaUGCCGuGGGU- -5'
19040 3' -62.6 NC_004684.1 + 1597 0.71 0.202507
Target:  5'- cCCGGuGCacGGCAUCGGucgccGUGCGcGCGCCCAc -3'
miRNA:   3'- -GGCC-CG--CCGUGGUC-----CAUGC-CGUGGGU- -5'
19040 3' -62.6 NC_004684.1 + 1632 0.75 0.106356
Target:  5'- aCCGGcGCa--ACCGGGUAcCGGCGCCCAa -3'
miRNA:   3'- -GGCC-CGccgUGGUCCAU-GCCGUGGGU- -5'
19040 3' -62.6 NC_004684.1 + 1931 0.69 0.264943
Target:  5'- gCCGGGCcuGGUACCGGcGcACGGUGgCCGc -3'
miRNA:   3'- -GGCCCG--CCGUGGUC-CaUGCCGUgGGU- -5'
19040 3' -62.6 NC_004684.1 + 2506 0.68 0.312286
Target:  5'- -aGGGCGGCcucaacgacGCCcGGcacugcggacgcUGCGGCACCUg -3'
miRNA:   3'- ggCCCGCCG---------UGGuCC------------AUGCCGUGGGu -5'
19040 3' -62.6 NC_004684.1 + 3444 0.75 0.106356
Target:  5'- aCCGuGGC--CAUguGGUACGGCACCCAg -3'
miRNA:   3'- -GGC-CCGccGUGguCCAUGCCGUGGGU- -5'
19040 3' -62.6 NC_004684.1 + 4048 0.67 0.382179
Target:  5'- gCUGGGCGGuCACCGGGgagAC--CACCUc -3'
miRNA:   3'- -GGCCCGCC-GUGGUCCa--UGccGUGGGu -5'
19040 3' -62.6 NC_004684.1 + 4322 0.67 0.382179
Target:  5'- aCCGGGC-GCACUGGaGUGCcuauGaCACCCAc -3'
miRNA:   3'- -GGCCCGcCGUGGUC-CAUGc---C-GUGGGU- -5'
19040 3' -62.6 NC_004684.1 + 5875 0.72 0.178603
Target:  5'- gCCGGGCaGCACCagccugaccGGGUggcgGCGGCGCUg- -3'
miRNA:   3'- -GGCCCGcCGUGG---------UCCA----UGCCGUGGgu -5'
19040 3' -62.6 NC_004684.1 + 6078 0.67 0.36336
Target:  5'- -aGGGCGGCgGCCcGGcgGCGGUgcugccggaaaucgACCCGg -3'
miRNA:   3'- ggCCCGCCG-UGGuCCa-UGCCG--------------UGGGU- -5'
19040 3' -62.6 NC_004684.1 + 6155 0.67 0.342101
Target:  5'- uUCGacGGCGGCgGCCAGcGUGCGGCgguagGCaCCGg -3'
miRNA:   3'- -GGC--CCGCCG-UGGUC-CAUGCCG-----UG-GGU- -5'
19040 3' -62.6 NC_004684.1 + 6651 0.66 0.425264
Target:  5'- aCCcGGCGGcCACCcGGUcGCcgGGCACCUc -3'
miRNA:   3'- -GGcCCGCC-GUGGuCCA-UG--CCGUGGGu -5'
19040 3' -62.6 NC_004684.1 + 6776 0.66 0.390561
Target:  5'- aUGGGCGacguGCGCCGGGUGacCGGCcuGCgCAc -3'
miRNA:   3'- gGCCCGC----CGUGGUCCAU--GCCG--UGgGU- -5'
19040 3' -62.6 NC_004684.1 + 6849 0.67 0.342101
Target:  5'- -aGGGUgucgacGGCACCGGGcGCGGCGagaUCAg -3'
miRNA:   3'- ggCCCG------CCGUGGUCCaUGCCGUg--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.