miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 27516 0.73 0.274257
Target:  5'- gACgGCCUGGGCGaGCUGAUgCGC-GCCa -3'
miRNA:   3'- aUGgCGGGUCUGC-CGACUA-GCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 40520 0.73 0.28815
Target:  5'- cGCaCGCCCAGGuuguCGGC-GGUgGCGACCu -3'
miRNA:   3'- aUG-GCGGGUCU----GCCGaCUAgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 64948 0.73 0.295302
Target:  5'- gGCCGCCCAGGCGGgC-GAUguCGGCCu -3'
miRNA:   3'- aUGGCGGGUCUGCC-GaCUAgcGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 37224 0.73 0.295302
Target:  5'- cGCCGCC--GACGGCguUGAUCGCccacuGGCCg -3'
miRNA:   3'- aUGGCGGguCUGCCG--ACUAGCG-----UUGG- -5'
19044 5' -57.1 NC_004684.1 + 58734 0.72 0.317583
Target:  5'- gGCCGCaCCGGGCacGCaUGAUCGCGuuGCCc -3'
miRNA:   3'- aUGGCG-GGUCUGc-CG-ACUAGCGU--UGG- -5'
19044 5' -57.1 NC_004684.1 + 30496 0.72 0.317583
Target:  5'- cACCGgCCAGucCGaGCUGGUUGcCGACCa -3'
miRNA:   3'- aUGGCgGGUCu-GC-CGACUAGC-GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 63460 0.72 0.333127
Target:  5'- cGCCGCCCAGuucCGGCauucggGggCGCGagGCCu -3'
miRNA:   3'- aUGGCGGGUCu--GCCGa-----CuaGCGU--UGG- -5'
19044 5' -57.1 NC_004684.1 + 47946 0.72 0.333127
Target:  5'- cGCCGCCCGGGCaugGGCgcacgGugguuUCGCAgagGCCg -3'
miRNA:   3'- aUGGCGGGUCUG---CCGa----Cu----AGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 61492 0.72 0.333127
Target:  5'- cGCCGCgCAGGCGGCggcgcucGAUgCGC-GCCa -3'
miRNA:   3'- aUGGCGgGUCUGCCGa------CUA-GCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 37113 0.72 0.341106
Target:  5'- cGCCGCUCAGGuccucUGGCuUGA-CGUAGCCa -3'
miRNA:   3'- aUGGCGGGUCU-----GCCG-ACUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 45555 0.72 0.341106
Target:  5'- gGCgGCCaUGGAugccCGGCUGAUCGCGcCCa -3'
miRNA:   3'- aUGgCGG-GUCU----GCCGACUAGCGUuGG- -5'
19044 5' -57.1 NC_004684.1 + 26665 0.72 0.341106
Target:  5'- cACCGCCCccGcCGcGCUGGUCGUcccGGCCa -3'
miRNA:   3'- aUGGCGGGu-CuGC-CGACUAGCG---UUGG- -5'
19044 5' -57.1 NC_004684.1 + 12235 0.71 0.349222
Target:  5'- gUGCCGCCC-GACGGCggcGAUC-CggUCa -3'
miRNA:   3'- -AUGGCGGGuCUGCCGa--CUAGcGuuGG- -5'
19044 5' -57.1 NC_004684.1 + 7543 0.71 0.349222
Target:  5'- gGCCGCCguGGCGGCguucUGGuUCGCcuacACCg -3'
miRNA:   3'- aUGGCGGguCUGCCG----ACU-AGCGu---UGG- -5'
19044 5' -57.1 NC_004684.1 + 19450 0.71 0.349222
Target:  5'- cGCCcauGCCCGGGCGGCggUGGcccgCGCGACa -3'
miRNA:   3'- aUGG---CGGGUCUGCCG--ACUa---GCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 59385 0.71 0.357475
Target:  5'- aACCGCCCGG-CGGCacaGUCGCuGCa -3'
miRNA:   3'- aUGGCGGGUCuGCCGac-UAGCGuUGg -5'
19044 5' -57.1 NC_004684.1 + 7971 0.71 0.357475
Target:  5'- gGCCG-CCAGGCGGCcgugCGCAACa -3'
miRNA:   3'- aUGGCgGGUCUGCCGacuaGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 17557 0.71 0.365863
Target:  5'- gACCGCCUGGACGaGgUGcgCGCAcuguaaggugcACCg -3'
miRNA:   3'- aUGGCGGGUCUGC-CgACuaGCGU-----------UGG- -5'
19044 5' -57.1 NC_004684.1 + 33116 0.71 0.374386
Target:  5'- cGCCGCCCuugcuGACGGUggccugCGCAGuCCa -3'
miRNA:   3'- aUGGCGGGu----CUGCCGacua--GCGUU-GG- -5'
19044 5' -57.1 NC_004684.1 + 27093 0.71 0.374386
Target:  5'- cGCCGCCCAGAuCGGUaccGAcuUUGCGcugGCCg -3'
miRNA:   3'- aUGGCGGGUCU-GCCGa--CU--AGCGU---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.