miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19045 5' -53.9 NC_004684.1 + 53072 0.66 0.840543
Target:  5'- gCGgUGGucuUGCCaccgaccuuCAGCUUGUacugGCCCGa -3'
miRNA:   3'- -GCgACCuuuACGG---------GUCGAACA----UGGGC- -5'
19045 5' -53.9 NC_004684.1 + 24781 0.66 0.840543
Target:  5'- gGCgggGGAGGUGCCgGGUcgaagGUGCCg- -3'
miRNA:   3'- gCGa--CCUUUACGGgUCGaa---CAUGGgc -5'
19045 5' -53.9 NC_004684.1 + 53611 0.66 0.831659
Target:  5'- gCGCUGGAg--GCgCAGgUUGgucGCCUGg -3'
miRNA:   3'- -GCGACCUuuaCGgGUCgAACa--UGGGC- -5'
19045 5' -53.9 NC_004684.1 + 59706 0.66 0.822565
Target:  5'- gGcCUGG-AAUGCCCGG-UUGU-CCCa -3'
miRNA:   3'- gC-GACCuUUACGGGUCgAACAuGGGc -5'
19045 5' -53.9 NC_004684.1 + 60727 0.66 0.822565
Target:  5'- uCGggGaGAGGUGCCCGGCgaccggGUGgCCGc -3'
miRNA:   3'- -GCgaC-CUUUACGGGUCGaa----CAUgGGC- -5'
19045 5' -53.9 NC_004684.1 + 64707 0.66 0.822565
Target:  5'- gGCcgGGGAugcgGUGCCCGGCgcugaaaugGUGCuuGa -3'
miRNA:   3'- gCGa-CCUU----UACGGGUCGaa-------CAUGggC- -5'
19045 5' -53.9 NC_004684.1 + 23301 0.66 0.819797
Target:  5'- aCGCUGGAccgcauuuacauGUGCgucaccaCCGGCgagcUGUACCUGg -3'
miRNA:   3'- -GCGACCUu-----------UACG-------GGUCGa---ACAUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 67073 0.66 0.803784
Target:  5'- uCGUUGGGcc-GCCCGGuCUUGguCCCGa -3'
miRNA:   3'- -GCGACCUuuaCGGGUC-GAACauGGGC- -5'
19045 5' -53.9 NC_004684.1 + 45558 0.66 0.794117
Target:  5'- gGCcaUGGA--UGCCCGGCUgaucGcGCCCa -3'
miRNA:   3'- gCG--ACCUuuACGGGUCGAa---CaUGGGc -5'
19045 5' -53.9 NC_004684.1 + 25714 0.67 0.784281
Target:  5'- gCGCUGGGuguUGCCgAGgUcg-GCCCGg -3'
miRNA:   3'- -GCGACCUuu-ACGGgUCgAacaUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 55413 0.67 0.783288
Target:  5'- gCGCUGGcgGUGgagaccaCCCAGCagcGUGCgCCGg -3'
miRNA:   3'- -GCGACCuuUAC-------GGGUCGaa-CAUG-GGC- -5'
19045 5' -53.9 NC_004684.1 + 50278 0.67 0.778302
Target:  5'- uCGCUGGccagcgccaggcccGAcggcgacuucacgcGUGCCCAGUcgGUgcGCCCGg -3'
miRNA:   3'- -GCGACC--------------UU--------------UACGGGUCGaaCA--UGGGC- -5'
19045 5' -53.9 NC_004684.1 + 25118 0.67 0.774286
Target:  5'- uGCUGGAu-UGCCCAGgUgucgGUcuuGCUCGc -3'
miRNA:   3'- gCGACCUuuACGGGUCgAa---CA---UGGGC- -5'
19045 5' -53.9 NC_004684.1 + 13440 0.67 0.764144
Target:  5'- -aCUGuGcgGUGCUCAGCU-GUGCCUGg -3'
miRNA:   3'- gcGAC-CuuUACGGGUCGAaCAUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 23160 0.67 0.764144
Target:  5'- aCGCUGGAGcagGUGCCCGaaaUGUuccgGCCCu -3'
miRNA:   3'- -GCGACCUU---UACGGGUcgaACA----UGGGc -5'
19045 5' -53.9 NC_004684.1 + 7232 0.67 0.754899
Target:  5'- gCGCgUGGAGguGUGCCCGGUgcaccaggagcaaggUGcgcgACCCGg -3'
miRNA:   3'- -GCG-ACCUU--UACGGGUCGa--------------ACa---UGGGC- -5'
19045 5' -53.9 NC_004684.1 + 53199 0.67 0.743462
Target:  5'- cCGCUGGccagGAAUGCguCCAGg--GUGCCCa -3'
miRNA:   3'- -GCGACC----UUUACG--GGUCgaaCAUGGGc -5'
19045 5' -53.9 NC_004684.1 + 52257 0.67 0.743462
Target:  5'- gCGCUGGcguGGAUcagGCCCAGCgu---CCCGg -3'
miRNA:   3'- -GCGACC---UUUA---CGGGUCGaacauGGGC- -5'
19045 5' -53.9 NC_004684.1 + 9468 0.68 0.732946
Target:  5'- gCGCUGGAGcuggcgggcAaGCgCAGCc-GUACCCGg -3'
miRNA:   3'- -GCGACCUU---------UaCGgGUCGaaCAUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 33700 0.68 0.705159
Target:  5'- cCGCUGGcgaGGGUGUCCAGCgcgguggugGUgcacagcgacgccauGCCCGg -3'
miRNA:   3'- -GCGACC---UUUACGGGUCGaa-------CA---------------UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.