miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19046 5' -58.3 NC_004684.1 + 28160 1.07 0.000889
Target:  5'- gACCCGUCGGCGCGCAAGAUCAGCGAGc -3'
miRNA:   3'- -UGGGCAGCCGCGCGUUCUAGUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 24986 0.85 0.039695
Target:  5'- gGCCCGcgUCGGCGCGuUggGGUCGGCGGGg -3'
miRNA:   3'- -UGGGC--AGCCGCGC-GuuCUAGUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 50379 0.82 0.062318
Target:  5'- cACCCGcUCGGUGCGCAu-GUCGGCGGGg -3'
miRNA:   3'- -UGGGC-AGCCGCGCGUucUAGUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 36520 0.78 0.111415
Target:  5'- aGCCUGggcaCGGCGUuCGGGAUCAGCGAGu -3'
miRNA:   3'- -UGGGCa---GCCGCGcGUUCUAGUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 8893 0.77 0.13109
Target:  5'- gACCgcaGUCGGCGCgGCAAGAagGGCGGGc -3'
miRNA:   3'- -UGGg--CAGCCGCG-CGUUCUagUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 49325 0.75 0.171098
Target:  5'- gACCCGUCGGCG-GCcauGGUCGGCGc- -3'
miRNA:   3'- -UGGGCAGCCGCgCGuu-CUAGUCGCuc -5'
19046 5' -58.3 NC_004684.1 + 28646 0.73 0.245235
Target:  5'- uACCCGUucCGGUGcCGCGAGA-CGGCGGu -3'
miRNA:   3'- -UGGGCA--GCCGC-GCGUUCUaGUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 4234 0.73 0.257138
Target:  5'- cGCCUGcgCGGCGCGCAGGAgccgcacUCGGCc-- -3'
miRNA:   3'- -UGGGCa-GCCGCGCGUUCU-------AGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 57374 0.72 0.284431
Target:  5'- uCCCgGUCGGCGCGCGgcAGGUcCGGCa-- -3'
miRNA:   3'- uGGG-CAGCCGCGCGU--UCUA-GUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 65134 0.72 0.284431
Target:  5'- uGCCCGcCGcCGCGCu-GAUCAGCGuGg -3'
miRNA:   3'- -UGGGCaGCcGCGCGuuCUAGUCGCuC- -5'
19046 5' -58.3 NC_004684.1 + 46364 0.71 0.313214
Target:  5'- uCUCGUUGGCGauuugGC-GGGUCAGCGAGc -3'
miRNA:   3'- uGGGCAGCCGCg----CGuUCUAGUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 13044 0.71 0.344152
Target:  5'- gGCCgGUCGGCuucCGCGAGAUCGcGCuGGGc -3'
miRNA:   3'- -UGGgCAGCCGc--GCGUUCUAGU-CG-CUC- -5'
19046 5' -58.3 NC_004684.1 + 53655 0.7 0.377227
Target:  5'- cCCCGUCGGUgaaGCGCAGGcgCacacgGGUGGGc -3'
miRNA:   3'- uGGGCAGCCG---CGCGUUCuaG-----UCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 18237 0.7 0.385823
Target:  5'- uGCgCCGUacugccCGGUGUGCGAGAcCGGCGAc -3'
miRNA:   3'- -UG-GGCA------GCCGCGCGUUCUaGUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 63882 0.7 0.385823
Target:  5'- cACCCGUCGGCGauuGCGGcGUCcuGGCGGc -3'
miRNA:   3'- -UGGGCAGCCGCg--CGUUcUAG--UCGCUc -5'
19046 5' -58.3 NC_004684.1 + 4443 0.7 0.394548
Target:  5'- cACCauCGUCGGCGCGCGccgcgcgcuGGUCGGCu-- -3'
miRNA:   3'- -UGG--GCAGCCGCGCGUu--------CUAGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 48332 0.7 0.394548
Target:  5'- gGCaCCGUUGaGCGCGCuGGAUCcacgGGCGGu -3'
miRNA:   3'- -UG-GGCAGC-CGCGCGuUCUAG----UCGCUc -5'
19046 5' -58.3 NC_004684.1 + 57020 0.69 0.403399
Target:  5'- uACCCGgCGGUGCGCGcGAUCucGCGc- -3'
miRNA:   3'- -UGGGCaGCCGCGCGUuCUAGu-CGCuc -5'
19046 5' -58.3 NC_004684.1 + 50316 0.69 0.412376
Target:  5'- uGCCCaGUCGGUGCGCccGGccaGGCGGGc -3'
miRNA:   3'- -UGGG-CAGCCGCGCGu-UCuagUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 53106 0.69 0.412376
Target:  5'- gGCCCGacUCGGCgGUGUu-GGUCAGCGuGa -3'
miRNA:   3'- -UGGGC--AGCCG-CGCGuuCUAGUCGCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.