miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19046 5' -58.3 NC_004684.1 + 657 0.67 0.549378
Target:  5'- uACCgGgUGGUGCGCAAGAccgUCAcCGAGu -3'
miRNA:   3'- -UGGgCaGCCGCGCGUUCU---AGUcGCUC- -5'
19046 5' -58.3 NC_004684.1 + 4234 0.73 0.257138
Target:  5'- cGCCUGcgCGGCGCGCAGGAgccgcacUCGGCc-- -3'
miRNA:   3'- -UGGGCa-GCCGCGCGUUCU-------AGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 4443 0.7 0.394548
Target:  5'- cACCauCGUCGGCGCGCGccgcgcgcuGGUCGGCu-- -3'
miRNA:   3'- -UGG--GCAGCCGCGCGUu--------CUAGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 6708 0.68 0.508369
Target:  5'- -aCCGUCGGCGCGagcaagccgAAGAaaGGCGAc -3'
miRNA:   3'- ugGGCAGCCGCGCg--------UUCUagUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 6860 0.67 0.559799
Target:  5'- gGCaCCG--GGCGCgGCGAGAUCAGCc-- -3'
miRNA:   3'- -UG-GGCagCCGCG-CGUUCUAGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 8475 0.67 0.559799
Target:  5'- cCCCGgaggCGGgGUgggGCGGGGaCGGCGAGa -3'
miRNA:   3'- uGGGCa---GCCgCG---CGUUCUaGUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 8893 0.77 0.13109
Target:  5'- gACCgcaGUCGGCGCgGCAAGAagGGCGGGc -3'
miRNA:   3'- -UGGg--CAGCCGCG-CGUUCUagUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 9313 0.67 0.549378
Target:  5'- uCCCGgucgagcugcaCGGUGCGCAcGGUCAGCu-- -3'
miRNA:   3'- uGGGCa----------GCCGCGCGUuCUAGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 10350 0.66 0.623203
Target:  5'- cCCCGcCGGggaggacaUGCGCGAGAUCGcGCGc- -3'
miRNA:   3'- uGGGCaGCC--------GCGCGUUCUAGU-CGCuc -5'
19046 5' -58.3 NC_004684.1 + 10578 0.66 0.588185
Target:  5'- cCCCGccgauccggcugguUCGGCGCGCGAGGU--GCGc- -3'
miRNA:   3'- uGGGC--------------AGCCGCGCGUUCUAguCGCuc -5'
19046 5' -58.3 NC_004684.1 + 11592 0.66 0.591358
Target:  5'- aGCCCGcCGGUGCGCcuGGAcgaCGGCa-- -3'
miRNA:   3'- -UGGGCaGCCGCGCGu-UCUa--GUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 13044 0.71 0.344152
Target:  5'- gGCCgGUCGGCuucCGCGAGAUCGcGCuGGGc -3'
miRNA:   3'- -UGGgCAGCCGc--GCGUUCUAGU-CG-CUC- -5'
19046 5' -58.3 NC_004684.1 + 18237 0.7 0.385823
Target:  5'- uGCgCCGUacugccCGGUGUGCGAGAcCGGCGAc -3'
miRNA:   3'- -UG-GGCA------GCCGCGCGUUCUaGUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 18619 0.68 0.488349
Target:  5'- gGCCCGccCGGCGUcgGCAAGucCAGCGuGg -3'
miRNA:   3'- -UGGGCa-GCCGCG--CGUUCuaGUCGCuC- -5'
19046 5' -58.3 NC_004684.1 + 19778 0.67 0.559799
Target:  5'- uGCCCGcCgGGgGCGaCAAGAU-GGCGGGc -3'
miRNA:   3'- -UGGGCaG-CCgCGC-GUUCUAgUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 20652 0.67 0.549378
Target:  5'- gACCCcagaGGUccgGCGCAAGAUCAGCc-- -3'
miRNA:   3'- -UGGGcag-CCG---CGCGUUCUAGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 20969 0.68 0.459039
Target:  5'- aACCCGgucggagCGGCgGCGCA-GGUCGGCc-- -3'
miRNA:   3'- -UGGGCa------GCCG-CGCGUuCUAGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 22443 0.66 0.591358
Target:  5'- -gCCGUCGGCGCGg-----CGGCGAu -3'
miRNA:   3'- ugGGCAGCCGCGCguucuaGUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 24986 0.85 0.039695
Target:  5'- gGCCCGcgUCGGCGCGuUggGGUCGGCGGGg -3'
miRNA:   3'- -UGGGC--AGCCGCGC-GuuCUAGUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 26410 0.68 0.508369
Target:  5'- cGCCac-CGGCGCGCu-GG-CAGCGGGg -3'
miRNA:   3'- -UGGgcaGCCGCGCGuuCUaGUCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.