miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19046 5' -58.3 NC_004684.1 + 39107 0.67 0.54834
Target:  5'- cACCCGgugacCGGguacgccUGCGCGGGGUCGGCa-- -3'
miRNA:   3'- -UGGGCa----GCC-------GCGCGUUCUAGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 26988 0.68 0.498314
Target:  5'- gGCCgGUgCGaGCGCgGCGGGcgCGGCGAu -3'
miRNA:   3'- -UGGgCA-GC-CGCG-CGUUCuaGUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 43618 0.68 0.498314
Target:  5'- aGCCCGgccaCGGUGUGgcCGAGcgCGGUGAGu -3'
miRNA:   3'- -UGGGCa---GCCGCGC--GUUCuaGUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 65777 0.68 0.508369
Target:  5'- cGCCgGUgGGCGCGCGca--CGGCGAc -3'
miRNA:   3'- -UGGgCAgCCGCGCGUucuaGUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 6708 0.68 0.508369
Target:  5'- -aCCGUCGGCGCGagcaagccgAAGAaaGGCGAc -3'
miRNA:   3'- ugGGCAGCCGCGCg--------UUCUagUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 26410 0.68 0.508369
Target:  5'- cGCCac-CGGCGCGCu-GG-CAGCGGGg -3'
miRNA:   3'- -UGGgcaGCCGCGCGuuCUaGUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 54210 0.67 0.518508
Target:  5'- gGCCUGcUCGGgGC-CGAGGUCGGCcAGc -3'
miRNA:   3'- -UGGGC-AGCCgCGcGUUCUAGUCGcUC- -5'
19046 5' -58.3 NC_004684.1 + 30493 0.67 0.528727
Target:  5'- gACCCGagcguggggCGGCugGCGCuGGGGUCGGUGAa -3'
miRNA:   3'- -UGGGCa--------GCCG--CGCG-UUCUAGUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 30175 0.67 0.532835
Target:  5'- aACgCCGUCGGCG-GCGAGcUgguggccaccaaaccCGGCGAGu -3'
miRNA:   3'- -UG-GGCAGCCGCgCGUUCuA---------------GUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 20969 0.68 0.459039
Target:  5'- aACCCGgucggagCGGCgGCGCA-GGUCGGCc-- -3'
miRNA:   3'- -UGGGCa------GCCG-CGCGUuCUAGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 48953 0.68 0.459039
Target:  5'- gGCaCGUCGGCGgGCGGGGUggccggGGCGGGc -3'
miRNA:   3'- -UGgGCAGCCGCgCGUUCUAg-----UCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 51244 0.69 0.430693
Target:  5'- gGCCgGUCGaugccgcacGCGCGCAuGAUCGGCu-- -3'
miRNA:   3'- -UGGgCAGC---------CGCGCGUuCUAGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 36520 0.78 0.111415
Target:  5'- aGCCUGggcaCGGCGUuCGGGAUCAGCGAGu -3'
miRNA:   3'- -UGGGCa---GCCGCGcGUUCUAGUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 49325 0.75 0.171098
Target:  5'- gACCCGUCGGCG-GCcauGGUCGGCGc- -3'
miRNA:   3'- -UGGGCAGCCGCgCGuu-CUAGUCGCuc -5'
19046 5' -58.3 NC_004684.1 + 28646 0.73 0.245235
Target:  5'- uACCCGUucCGGUGcCGCGAGA-CGGCGGu -3'
miRNA:   3'- -UGGGCA--GCCGC-GCGUUCUaGUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 4234 0.73 0.257138
Target:  5'- cGCCUGcgCGGCGCGCAGGAgccgcacUCGGCc-- -3'
miRNA:   3'- -UGGGCa-GCCGCGCGUUCU-------AGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 13044 0.71 0.344152
Target:  5'- gGCCgGUCGGCuucCGCGAGAUCGcGCuGGGc -3'
miRNA:   3'- -UGGgCAGCCGc--GCGUUCUAGU-CG-CUC- -5'
19046 5' -58.3 NC_004684.1 + 53655 0.7 0.377227
Target:  5'- cCCCGUCGGUgaaGCGCAGGcgCacacgGGUGGGc -3'
miRNA:   3'- uGGGCAGCCG---CGCGUUCuaG-----UCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 48332 0.7 0.394548
Target:  5'- gGCaCCGUUGaGCGCGCuGGAUCcacgGGCGGu -3'
miRNA:   3'- -UG-GGCAGC-CGCGCGuUCUAG----UCGCUc -5'
19046 5' -58.3 NC_004684.1 + 50316 0.69 0.412376
Target:  5'- uGCCCaGUCGGUGCGCccGGccaGGCGGGc -3'
miRNA:   3'- -UGGG-CAGCCGCGCGu-UCuagUCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.