miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19047 5' -56.9 NC_004684.1 + 9876 0.66 0.716927
Target:  5'- aUCCCGACgccgcgcaggagcagGCCGccGACGAGUgguccGGGCu -3'
miRNA:   3'- aGGGGCUG---------------UGGUaaCUGCUCA-----CCCGc -5'
19047 5' -56.9 NC_004684.1 + 35896 0.66 0.681328
Target:  5'- gUCCCCGACACU----GCauacGUGGGCu -3'
miRNA:   3'- -AGGGGCUGUGGuaacUGcu--CACCCGc -5'
19047 5' -56.9 NC_004684.1 + 11167 0.66 0.670743
Target:  5'- -aCCUGGcCGCCA---GCGAGUGGGUc -3'
miRNA:   3'- agGGGCU-GUGGUaacUGCUCACCCGc -5'
19047 5' -56.9 NC_004684.1 + 55131 0.67 0.660124
Target:  5'- cCCCCGGCgaaaugGCCGguugUGGCG-GUGGaGCc -3'
miRNA:   3'- aGGGGCUG------UGGUa---ACUGCuCACC-CGc -5'
19047 5' -56.9 NC_004684.1 + 39608 0.67 0.660124
Target:  5'- aCCgCCGcGCACCGUcgGGCGGGguguacagcccGGGCGa -3'
miRNA:   3'- aGG-GGC-UGUGGUAa-CUGCUCa----------CCCGC- -5'
19047 5' -56.9 NC_004684.1 + 21537 0.67 0.649481
Target:  5'- aUCgCCGACGCCAUcaACGAGcGcGGCa -3'
miRNA:   3'- -AGgGGCUGUGGUAacUGCUCaC-CCGc -5'
19047 5' -56.9 NC_004684.1 + 64691 0.67 0.64735
Target:  5'- cCCCCGGCACCGgccaggccgggGAUGcGGUGcccGGCGc -3'
miRNA:   3'- aGGGGCUGUGGUaa---------CUGC-UCAC---CCGC- -5'
19047 5' -56.9 NC_004684.1 + 17931 0.67 0.638822
Target:  5'- aCCCCGGCgaACCGUUcGACucGUGGaucGCGg -3'
miRNA:   3'- aGGGGCUG--UGGUAA-CUGcuCACC---CGC- -5'
19047 5' -56.9 NC_004684.1 + 66338 0.67 0.638822
Target:  5'- gUCCCggUGACGCCgg-GGCGGGcggccaGGGCGa -3'
miRNA:   3'- -AGGG--GCUGUGGuaaCUGCUCa-----CCCGC- -5'
19047 5' -56.9 NC_004684.1 + 51030 0.67 0.634557
Target:  5'- gUCCaCCGGCaggaugcggccaccGCCggUGACGAugcgcccGUGGGUGa -3'
miRNA:   3'- -AGG-GGCUG--------------UGGuaACUGCU-------CACCCGC- -5'
19047 5' -56.9 NC_004684.1 + 8110 0.67 0.628159
Target:  5'- cCCaCCGGCAgCAUUGACGAGgacgaccGCGu -3'
miRNA:   3'- aGG-GGCUGUgGUAACUGCUCacc----CGC- -5'
19047 5' -56.9 NC_004684.1 + 2807 0.67 0.628159
Target:  5'- uUCgCCGAgGCCAagaagcuccUGcGCGGGUGGGUGg -3'
miRNA:   3'- -AGgGGCUgUGGUa--------AC-UGCUCACCCGC- -5'
19047 5' -56.9 NC_004684.1 + 14909 0.68 0.600469
Target:  5'- cCUUCGugGCCAUggucccguggggguuUGACGAGUGuGCGc -3'
miRNA:   3'- aGGGGCugUGGUA---------------ACUGCUCACcCGC- -5'
19047 5' -56.9 NC_004684.1 + 3502 0.68 0.596221
Target:  5'- gCCgCCagGACGCCGcaaucgccGACGGGUGGGCc -3'
miRNA:   3'- aGG-GG--CUGUGGUaa------CUGCUCACCCGc -5'
19047 5' -56.9 NC_004684.1 + 18448 0.68 0.575058
Target:  5'- cCCgCCGACguGCCGUUcggcGACGAGgccGGGCc -3'
miRNA:   3'- aGG-GGCUG--UGGUAA----CUGCUCa--CCCGc -5'
19047 5' -56.9 NC_004684.1 + 27155 0.68 0.564539
Target:  5'- gCCCCGAgACC---GGCaAGUGGGCc -3'
miRNA:   3'- aGGGGCUgUGGuaaCUGcUCACCCGc -5'
19047 5' -56.9 NC_004684.1 + 11516 0.68 0.564539
Target:  5'- cUCCCGGCACCGcu--CG-GUGGGCc -3'
miRNA:   3'- aGGGGCUGUGGUaacuGCuCACCCGc -5'
19047 5' -56.9 NC_004684.1 + 9290 0.68 0.564539
Target:  5'- gUUCCCGACGCC---GACG-GUGGcGCu -3'
miRNA:   3'- -AGGGGCUGUGGuaaCUGCuCACC-CGc -5'
19047 5' -56.9 NC_004684.1 + 18300 0.69 0.533317
Target:  5'- cCUgUGGCACCugccgGUUGGCGGcgacGUGGGCGa -3'
miRNA:   3'- aGGgGCUGUGG-----UAACUGCU----CACCCGC- -5'
19047 5' -56.9 NC_004684.1 + 46916 0.69 0.533317
Target:  5'- aUCCCCcagGACcgGCCAacGGCGGuGUGGGUGa -3'
miRNA:   3'- -AGGGG---CUG--UGGUaaCUGCU-CACCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.