Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19049 | 3' | -53.7 | NC_004684.1 | + | 34293 | 0.69 | 0.662931 |
Target: 5'- gCGAGCGCCU--GCGUCGGcagcGC-CAcGCCg -3' miRNA: 3'- -GUUCGCGGAcaUGUAGCC----UGaGU-CGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 43636 | 0.69 | 0.667314 |
Target: 5'- cCGAGCGCg-GUGaguuCGUCGGACcaaacguccuggaacUCAGCCc -3' miRNA: 3'- -GUUCGCGgaCAU----GUAGCCUG---------------AGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 1893 | 0.69 | 0.673878 |
Target: 5'- gCGAGCaCCUGgagACggUGGccaaACUCAGCCa -3' miRNA: 3'- -GUUCGcGGACa--UGuaGCC----UGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 62391 | 0.69 | 0.684786 |
Target: 5'- aCAGGUccaccuucGCCcgGUACGUcgCGGAgUCGGCCu -3' miRNA: 3'- -GUUCG--------CGGa-CAUGUA--GCCUgAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 56882 | 0.69 | 0.695644 |
Target: 5'- --uGCGCCUGacCGUCGGcggcccaguGCgUCGGCCg -3' miRNA: 3'- guuCGCGGACauGUAGCC---------UG-AGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 58100 | 0.69 | 0.695644 |
Target: 5'- -uAGCGCCaccGUcgGCGUCGGGaacucgacaUCGGCCa -3' miRNA: 3'- guUCGCGGa--CA--UGUAGCCUg--------AGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 44626 | 0.68 | 0.70644 |
Target: 5'- gGAGCGCCgggGggag-CGGguACUCGGCCc -3' miRNA: 3'- gUUCGCGGa--CauguaGCC--UGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 46184 | 0.68 | 0.70644 |
Target: 5'- gAAGCGCCUGcGCGU---GCUUGGCCc -3' miRNA: 3'- gUUCGCGGACaUGUAgccUGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 46353 | 0.68 | 0.70644 |
Target: 5'- gGAGCGUg-GUGguCGUCGuGCUCGGCCa -3' miRNA: 3'- gUUCGCGgaCAU--GUAGCcUGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 53549 | 0.68 | 0.70644 |
Target: 5'- --cGUGCCUGgauuUCGGACUCccagAGCUg -3' miRNA: 3'- guuCGCGGACauguAGCCUGAG----UCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 31750 | 0.68 | 0.727803 |
Target: 5'- -cGGC-CCUGUACGUCGGcCUgUAcGCCa -3' miRNA: 3'- guUCGcGGACAUGUAGCCuGA-GU-CGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 33500 | 0.68 | 0.727803 |
Target: 5'- -cGGCGgcCCUGUACucgCGGGCgguggCGGCUa -3' miRNA: 3'- guUCGC--GGACAUGua-GCCUGa----GUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 66727 | 0.68 | 0.727803 |
Target: 5'- uCAGGCGCacgCUGUcgugcGCGUCGGugUCcuuggGGUCg -3' miRNA: 3'- -GUUCGCG---GACA-----UGUAGCCugAG-----UCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 52102 | 0.68 | 0.727803 |
Target: 5'- --cGCGCCaGccaaACGUCGGGCUggUGGCCa -3' miRNA: 3'- guuCGCGGaCa---UGUAGCCUGA--GUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 47824 | 0.68 | 0.738347 |
Target: 5'- --cGUGCCUGcuCGUCGGAC-CcGCCu -3' miRNA: 3'- guuCGCGGACauGUAGCCUGaGuCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 11633 | 0.68 | 0.748784 |
Target: 5'- -cGGcCGCCUGacCGUCGGcaUCGGCCa -3' miRNA: 3'- guUC-GCGGACauGUAGCCugAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 11443 | 0.68 | 0.748784 |
Target: 5'- gGAGCGCg---GCGUCGGcgUCGGCCu -3' miRNA: 3'- gUUCGCGgacaUGUAGCCugAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 59917 | 0.68 | 0.748784 |
Target: 5'- -cGGCcCUUGUcaGCGUCGGugUcCGGCCc -3' miRNA: 3'- guUCGcGGACA--UGUAGCCugA-GUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 35424 | 0.68 | 0.752926 |
Target: 5'- -cAGCGCggagguggugaucggCUG-GCGUCGGAUUgCGGCCa -3' miRNA: 3'- guUCGCG---------------GACaUGUAGCCUGA-GUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 6004 | 0.67 | 0.759102 |
Target: 5'- uCAGGCGCac---CAUCGGACgcggUGGCCu -3' miRNA: 3'- -GUUCGCGgacauGUAGCCUGa---GUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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