Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19050 | 5' | -55 | NC_004684.1 | + | 27451 | 1.08 | 0.001554 |
Target: 5'- cACCGCCAUAACCACAGGAGGACGUCAu -3' miRNA: 3'- -UGGCGGUAUUGGUGUCCUCCUGCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 14609 | 0.83 | 0.086418 |
Target: 5'- aACCGCCAgcGCCucuACgAGGAGGGCGUCAa -3' miRNA: 3'- -UGGCGGUauUGG---UG-UCCUCCUGCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 19332 | 0.77 | 0.225206 |
Target: 5'- cGCCGCCGUGGCCgaGCGGGAGG-CGc-- -3' miRNA: 3'- -UGGCGGUAUUGG--UGUCCUCCuGCagu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 42049 | 0.76 | 0.249707 |
Target: 5'- cGCCGCCAaGGCCACcgGGGAGGcCGcCAu -3' miRNA: 3'- -UGGCGGUaUUGGUG--UCCUCCuGCaGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 25965 | 0.74 | 0.352816 |
Target: 5'- cACCGCCGcaccaccGCCACGGG-GGACGcCAc -3' miRNA: 3'- -UGGCGGUau-----UGGUGUCCuCCUGCaGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 2862 | 0.73 | 0.396292 |
Target: 5'- gGCCGCCG-AGCCGCu---GGGCGUCAu -3' miRNA: 3'- -UGGCGGUaUUGGUGuccuCCUGCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 10725 | 0.72 | 0.414624 |
Target: 5'- cACCGCCAggcguuucuGCCACGGGgucaGGGACGa-- -3' miRNA: 3'- -UGGCGGUau-------UGGUGUCC----UCCUGCagu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 13867 | 0.72 | 0.414624 |
Target: 5'- cGCCGaCC-UGGCCAuuCAGGAGGGUGUCGa -3' miRNA: 3'- -UGGC-GGuAUUGGU--GUCCUCCUGCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 4624 | 0.72 | 0.443072 |
Target: 5'- cACCuGCCc--GCCGCAGGAGGGCaaGUCc -3' miRNA: 3'- -UGG-CGGuauUGGUGUCCUCCUG--CAGu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 42649 | 0.71 | 0.472589 |
Target: 5'- uGCCGCCAgcgaugAGCgCGguGGAGGGCaUCAc -3' miRNA: 3'- -UGGCGGUa-----UUG-GUguCCUCCUGcAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 49089 | 0.71 | 0.482647 |
Target: 5'- cGCCGCCAaccggcagguGCCACAGGucGcCGUCGg -3' miRNA: 3'- -UGGCGGUau--------UGGUGUCCucCuGCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 10338 | 0.71 | 0.492808 |
Target: 5'- gGCCGCCAUcGACCccGCcgGGGAGGACa--- -3' miRNA: 3'- -UGGCGGUA-UUGG--UG--UCCUCCUGcagu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 35413 | 0.7 | 0.566328 |
Target: 5'- aGCCGCCGagGAgCGCGGGAGG-CGa-- -3' miRNA: 3'- -UGGCGGUa-UUgGUGUCCUCCuGCagu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 54278 | 0.69 | 0.598759 |
Target: 5'- aGCUGCCGcgcUGGCCGguGGGGcGGCGUgCAc -3' miRNA: 3'- -UGGCGGU---AUUGGUguCCUC-CUGCA-GU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 10151 | 0.69 | 0.598759 |
Target: 5'- uGCCGCCc--GCC-CAGGuGGGGCGUUu -3' miRNA: 3'- -UGGCGGuauUGGuGUCC-UCCUGCAGu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 33689 | 0.69 | 0.620533 |
Target: 5'- cACCGCCGcuGCCGCuGGcGAGGGUGUCc -3' miRNA: 3'- -UGGCGGUauUGGUG-UC-CUCCUGCAGu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 65581 | 0.68 | 0.630349 |
Target: 5'- aGCCGCCAUGgccucggucaugaGCCGCAcGGcGG-CGUCc -3' miRNA: 3'- -UGGCGGUAU-------------UGGUGU-CCuCCuGCAGu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 54983 | 0.68 | 0.642347 |
Target: 5'- gGCCGCCG--ACCACAGc-GGACGg-- -3' miRNA: 3'- -UGGCGGUauUGGUGUCcuCCUGCagu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 3570 | 0.68 | 0.642347 |
Target: 5'- gUCGUgGUGcGCCACAGcGGGGACGUgGa -3' miRNA: 3'- uGGCGgUAU-UGGUGUC-CUCCUGCAgU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 55560 | 0.68 | 0.642347 |
Target: 5'- gGCCGCCGUGGCC-CGGuGGccGGGgGUCc -3' miRNA: 3'- -UGGCGGUAUUGGuGUC-CU--CCUgCAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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