miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19050 5' -55 NC_004684.1 + 19332 0.77 0.225206
Target:  5'- cGCCGCCGUGGCCgaGCGGGAGG-CGc-- -3'
miRNA:   3'- -UGGCGGUAUUGG--UGUCCUCCuGCagu -5'
19050 5' -55 NC_004684.1 + 15880 0.68 0.653246
Target:  5'- gGCCGCCAgcgGCCcuguGCAGccgcAGGGCGUCc -3'
miRNA:   3'- -UGGCGGUau-UGG----UGUCc---UCCUGCAGu -5'
19050 5' -55 NC_004684.1 + 62455 0.68 0.685784
Target:  5'- cCUGCCAgcGCUcCGGGAGGugGcCGu -3'
miRNA:   3'- uGGCGGUauUGGuGUCCUCCugCaGU- -5'
19050 5' -55 NC_004684.1 + 36450 0.67 0.696543
Target:  5'- uGCUGgCGUGACCAU-GGuGGACGUgAg -3'
miRNA:   3'- -UGGCgGUAUUGGUGuCCuCCUGCAgU- -5'
19050 5' -55 NC_004684.1 + 45694 0.67 0.717867
Target:  5'- gGCCgaGCCAUGACCACGGuGucgcacaucGGGAaGUCGg -3'
miRNA:   3'- -UGG--CGGUAUUGGUGUC-C---------UCCUgCAGU- -5'
19050 5' -55 NC_004684.1 + 52240 0.67 0.72841
Target:  5'- gGCCGUgGU-GCCACAGcGGcGGuACGUCGa -3'
miRNA:   3'- -UGGCGgUAuUGGUGUC-CU-CC-UGCAGU- -5'
19050 5' -55 NC_004684.1 + 8838 0.66 0.749201
Target:  5'- cAUCGCCcgacUGGCCAUGGGccuGGACGUg- -3'
miRNA:   3'- -UGGCGGu---AUUGGUGUCCu--CCUGCAgu -5'
19050 5' -55 NC_004684.1 + 12412 0.66 0.749201
Target:  5'- gUCGCCGUuuaguguucGACCGCAGaGAGcGACcGUCu -3'
miRNA:   3'- uGGCGGUA---------UUGGUGUC-CUC-CUG-CAGu -5'
19050 5' -55 NC_004684.1 + 63319 0.66 0.749201
Target:  5'- gGCCGuuCCAguugAACC--GGGAGGugGUCu -3'
miRNA:   3'- -UGGC--GGUa---UUGGugUCCUCCugCAGu -5'
19050 5' -55 NC_004684.1 + 55560 0.68 0.642347
Target:  5'- gGCCGCCGUGGCC-CGGuGGccGGGgGUCc -3'
miRNA:   3'- -UGGCGGUAUUGGuGUC-CU--CCUgCAGu -5'
19050 5' -55 NC_004684.1 + 54983 0.68 0.642347
Target:  5'- gGCCGCCG--ACCACAGc-GGACGg-- -3'
miRNA:   3'- -UGGCGGUauUGGUGUCcuCCUGCagu -5'
19050 5' -55 NC_004684.1 + 13867 0.72 0.414624
Target:  5'- cGCCGaCC-UGGCCAuuCAGGAGGGUGUCGa -3'
miRNA:   3'- -UGGC-GGuAUUGGU--GUCCUCCUGCAGU- -5'
19050 5' -55 NC_004684.1 + 4624 0.72 0.443072
Target:  5'- cACCuGCCc--GCCGCAGGAGGGCaaGUCc -3'
miRNA:   3'- -UGG-CGGuauUGGUGUCCUCCUG--CAGu -5'
19050 5' -55 NC_004684.1 + 42649 0.71 0.472589
Target:  5'- uGCCGCCAgcgaugAGCgCGguGGAGGGCaUCAc -3'
miRNA:   3'- -UGGCGGUa-----UUG-GUguCCUCCUGcAGU- -5'
19050 5' -55 NC_004684.1 + 49089 0.71 0.482647
Target:  5'- cGCCGCCAaccggcagguGCCACAGGucGcCGUCGg -3'
miRNA:   3'- -UGGCGGUau--------UGGUGUCCucCuGCAGU- -5'
19050 5' -55 NC_004684.1 + 10338 0.71 0.492808
Target:  5'- gGCCGCCAUcGACCccGCcgGGGAGGACa--- -3'
miRNA:   3'- -UGGCGGUA-UUGG--UG--UCCUCCUGcagu -5'
19050 5' -55 NC_004684.1 + 35413 0.7 0.566328
Target:  5'- aGCCGCCGagGAgCGCGGGAGG-CGa-- -3'
miRNA:   3'- -UGGCGGUa-UUgGUGUCCUCCuGCagu -5'
19050 5' -55 NC_004684.1 + 65581 0.68 0.630349
Target:  5'- aGCCGCCAUGgccucggucaugaGCCGCAcGGcGG-CGUCc -3'
miRNA:   3'- -UGGCGGUAU-------------UGGUGU-CCuCCuGCAGu -5'
19050 5' -55 NC_004684.1 + 3570 0.68 0.642347
Target:  5'- gUCGUgGUGcGCCACAGcGGGGACGUgGa -3'
miRNA:   3'- uGGCGgUAU-UGGUGUC-CUCCUGCAgU- -5'
19050 5' -55 NC_004684.1 + 41613 0.65 0.798939
Target:  5'- cACCGgCGUGccGCCGguGGAgccGGACGcCAg -3'
miRNA:   3'- -UGGCgGUAU--UGGUguCCU---CCUGCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.