miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19050 5' -55 NC_004684.1 + 557 0.65 0.798939
Target:  5'- gGCCGCC---ACCG-AGGAGGACa--- -3'
miRNA:   3'- -UGGCGGuauUGGUgUCCUCCUGcagu -5'
19050 5' -55 NC_004684.1 + 2862 0.73 0.396292
Target:  5'- gGCCGCCG-AGCCGCu---GGGCGUCAu -3'
miRNA:   3'- -UGGCGGUaUUGGUGuccuCCUGCAGU- -5'
19050 5' -55 NC_004684.1 + 3570 0.68 0.642347
Target:  5'- gUCGUgGUGcGCCACAGcGGGGACGUgGa -3'
miRNA:   3'- uGGCGgUAU-UGGUGUC-CUCCUGCAgU- -5'
19050 5' -55 NC_004684.1 + 4624 0.72 0.443072
Target:  5'- cACCuGCCc--GCCGCAGGAGGGCaaGUCc -3'
miRNA:   3'- -UGG-CGGuauUGGUGUCCUCCUG--CAGu -5'
19050 5' -55 NC_004684.1 + 6058 0.66 0.759426
Target:  5'- gGCCGCCAccuacGCCGCc-GAGGGCGgCGg -3'
miRNA:   3'- -UGGCGGUau---UGGUGucCUCCUGCaGU- -5'
19050 5' -55 NC_004684.1 + 8838 0.66 0.749201
Target:  5'- cAUCGCCcgacUGGCCAUGGGccuGGACGUg- -3'
miRNA:   3'- -UGGCGGu---AUUGGUGUCCu--CCUGCAgu -5'
19050 5' -55 NC_004684.1 + 10151 0.69 0.598759
Target:  5'- uGCCGCCc--GCC-CAGGuGGGGCGUUu -3'
miRNA:   3'- -UGGCGGuauUGGuGUCC-UCCUGCAGu -5'
19050 5' -55 NC_004684.1 + 10338 0.71 0.492808
Target:  5'- gGCCGCCAUcGACCccGCcgGGGAGGACa--- -3'
miRNA:   3'- -UGGCGGUA-UUGG--UG--UCCUCCUGcagu -5'
19050 5' -55 NC_004684.1 + 10725 0.72 0.414624
Target:  5'- cACCGCCAggcguuucuGCCACGGGgucaGGGACGa-- -3'
miRNA:   3'- -UGGCGGUau-------UGGUGUCC----UCCUGCagu -5'
19050 5' -55 NC_004684.1 + 11417 0.66 0.789291
Target:  5'- uUCGCCGUAGacgccgaugacCCGCuGGAGcgcGGCGUCGg -3'
miRNA:   3'- uGGCGGUAUU-----------GGUGuCCUC---CUGCAGU- -5'
19050 5' -55 NC_004684.1 + 12391 0.68 0.642347
Target:  5'- -gUGCCGUuuGCCGCAGGAGccguccgcuGugGUCGg -3'
miRNA:   3'- ugGCGGUAu-UGGUGUCCUC---------CugCAGU- -5'
19050 5' -55 NC_004684.1 + 12412 0.66 0.749201
Target:  5'- gUCGCCGUuuaguguucGACCGCAGaGAGcGACcGUCu -3'
miRNA:   3'- uGGCGGUA---------UUGGUGUC-CUC-CUG-CAGu -5'
19050 5' -55 NC_004684.1 + 13867 0.72 0.414624
Target:  5'- cGCCGaCC-UGGCCAuuCAGGAGGGUGUCGa -3'
miRNA:   3'- -UGGC-GGuAUUGGU--GUCCUCCUGCAGU- -5'
19050 5' -55 NC_004684.1 + 14577 0.65 0.798939
Target:  5'- -gCGCCGgGGCCACcgAGGAGGAgCG-CGa -3'
miRNA:   3'- ugGCGGUaUUGGUG--UCCUCCU-GCaGU- -5'
19050 5' -55 NC_004684.1 + 14609 0.83 0.086418
Target:  5'- aACCGCCAgcGCCucuACgAGGAGGGCGUCAa -3'
miRNA:   3'- -UGGCGGUauUGG---UG-UCCUCCUGCAGU- -5'
19050 5' -55 NC_004684.1 + 15880 0.68 0.653246
Target:  5'- gGCCGCCAgcgGCCcuguGCAGccgcAGGGCGUCc -3'
miRNA:   3'- -UGGCGGUau-UGG----UGUCc---UCCUGCAGu -5'
19050 5' -55 NC_004684.1 + 18065 0.67 0.696543
Target:  5'- cGCCGaCCAUGGCCGCcgacGGGucgauccuGGACGgCAa -3'
miRNA:   3'- -UGGC-GGUAUUGGUG----UCCu-------CCUGCaGU- -5'
19050 5' -55 NC_004684.1 + 18132 0.65 0.798939
Target:  5'- cACCGCCAacaUGgacgcGCCGCuguGGGGcGACGUg- -3'
miRNA:   3'- -UGGCGGU---AU-----UGGUGu--CCUC-CUGCAgu -5'
19050 5' -55 NC_004684.1 + 19332 0.77 0.225206
Target:  5'- cGCCGCCGUGGCCgaGCGGGAGG-CGc-- -3'
miRNA:   3'- -UGGCGGUAUUGG--UGUCCUCCuGCagu -5'
19050 5' -55 NC_004684.1 + 20472 0.67 0.738858
Target:  5'- cACCGCCGuUGGCCGgucCuGGGGGAUG-CGg -3'
miRNA:   3'- -UGGCGGU-AUUGGU---GuCCUCCUGCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.