miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19052 3' -53.3 NC_004684.1 + 26153 1.11 0.00127
Target:  5'- gGCCUUCAAAGGUGUACCAGGCCAGCAg -3'
miRNA:   3'- -CGGAAGUUUCCACAUGGUCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 50653 0.79 0.185937
Target:  5'- cGCCgUCGGGGGUGcggACCAGGCguGCGc -3'
miRNA:   3'- -CGGaAGUUUCCACa--UGGUCCGguCGU- -5'
19052 3' -53.3 NC_004684.1 + 51722 0.76 0.291226
Target:  5'- cGCCUUCc-AGGUcGUACUGGGCCAGgAa -3'
miRNA:   3'- -CGGAAGuuUCCA-CAUGGUCCGGUCgU- -5'
19052 3' -53.3 NC_004684.1 + 24531 0.74 0.390455
Target:  5'- uGCCaUCuacggcGGUGUGCCGGGCC-GCGa -3'
miRNA:   3'- -CGGaAGuuu---CCACAUGGUCCGGuCGU- -5'
19052 3' -53.3 NC_004684.1 + 31263 0.74 0.399662
Target:  5'- cGCCccCAcAGGUGUGgCgaAGGCCAGCAg -3'
miRNA:   3'- -CGGaaGUuUCCACAUgG--UCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 5672 0.74 0.409006
Target:  5'- aGCCguggUCGGAGGUG-GCCGGGgcCCGGCc -3'
miRNA:   3'- -CGGa---AGUUUCCACaUGGUCC--GGUCGu -5'
19052 3' -53.3 NC_004684.1 + 6834 0.73 0.426164
Target:  5'- aGCUggucgagUUCGAGGGUGUcgacggcACCGGGCgCGGCGa -3'
miRNA:   3'- -CGG-------AAGUUUCCACA-------UGGUCCG-GUCGU- -5'
19052 3' -53.3 NC_004684.1 + 66862 0.73 0.447705
Target:  5'- gGCCUUCGccGG-GU-CCAGGCCuuGCAg -3'
miRNA:   3'- -CGGAAGUuuCCaCAuGGUCCGGu-CGU- -5'
19052 3' -53.3 NC_004684.1 + 43977 0.73 0.457694
Target:  5'- aGCCgugCGcGGGcGUACCcGGCCAGCu -3'
miRNA:   3'- -CGGaa-GUuUCCaCAUGGuCCGGUCGu -5'
19052 3' -53.3 NC_004684.1 + 43725 0.73 0.457694
Target:  5'- gGCCgaccaggcCGucGGUGUACCcGGUCAGCAg -3'
miRNA:   3'- -CGGaa------GUuuCCACAUGGuCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 21865 0.72 0.467801
Target:  5'- cGCCggUCGAagAGGUGgaugagcaggGCCAGGCCAucGCGg -3'
miRNA:   3'- -CGGa-AGUU--UCCACa---------UGGUCCGGU--CGU- -5'
19052 3' -53.3 NC_004684.1 + 65375 0.72 0.509316
Target:  5'- gGCCUggUCAAcgucGGGgcgGUccagcgcCCAGGCCAGCAg -3'
miRNA:   3'- -CGGA--AGUU----UCCa--CAu------GGUCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 46671 0.72 0.518873
Target:  5'- cGCUccucgggUUCGGGGGUG-ACCGGGUCGGUg -3'
miRNA:   3'- -CGG-------AAGUUUCCACaUGGUCCGGUCGu -5'
19052 3' -53.3 NC_004684.1 + 9545 0.71 0.563224
Target:  5'- cGCUggCAAucGGGcggGUACCGgcGGCCAGCAc -3'
miRNA:   3'- -CGGaaGUU--UCCa--CAUGGU--CCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 14703 0.71 0.563224
Target:  5'- cCCUUCGccgcAGGGccUGUACgGGGCCAcGCAa -3'
miRNA:   3'- cGGAAGU----UUCC--ACAUGgUCCGGU-CGU- -5'
19052 3' -53.3 NC_004684.1 + 55281 0.71 0.574207
Target:  5'- aGCCggggUCGGGGGUugcGUgauggccgccGCgCGGGCCAGCAc -3'
miRNA:   3'- -CGGa---AGUUUCCA---CA----------UG-GUCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 15871 0.71 0.574207
Target:  5'- aCCUggaGAAGGUGUcccGCCAGG-CGGCGg -3'
miRNA:   3'- cGGAag-UUUCCACA---UGGUCCgGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 61142 0.7 0.596309
Target:  5'- gGCCcagCGAcuGGGUGUACUcGGUCAGCc -3'
miRNA:   3'- -CGGaa-GUU--UCCACAUGGuCCGGUCGu -5'
19052 3' -53.3 NC_004684.1 + 2795 0.7 0.607412
Target:  5'- aGCCggaaccgCAAcuGGUcgacGUACCGGGCCGGUAc -3'
miRNA:   3'- -CGGaa-----GUUu-CCA----CAUGGUCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 55424 0.7 0.607412
Target:  5'- cGCCggUCGc-GGUGUgcgccgcagguGCCAGGCUGGCGa -3'
miRNA:   3'- -CGGa-AGUuuCCACA-----------UGGUCCGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.