miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19052 3' -53.3 NC_004684.1 + 49214 0.66 0.810272
Target:  5'- gGCCagUCGGucG-GUGCCGGGCCgGGCGu -3'
miRNA:   3'- -CGGa-AGUUucCaCAUGGUCCGG-UCGU- -5'
19052 3' -53.3 NC_004684.1 + 54032 0.68 0.728711
Target:  5'- gGCCUUCGuggcGGGUGUGCCc-GCC-GUAg -3'
miRNA:   3'- -CGGAAGUu---UCCACAUGGucCGGuCGU- -5'
19052 3' -53.3 NC_004684.1 + 37555 0.68 0.728711
Target:  5'- cGCCggUGGAcccGGUGUACCGGGagcuggaggugcCCGGCAu -3'
miRNA:   3'- -CGGaaGUUU---CCACAUGGUCC------------GGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 60641 0.67 0.769637
Target:  5'- cGCagggUCGAGGGggcagGUGCCAGGaugucgccuaccuCCAGCu -3'
miRNA:   3'- -CGga--AGUUUCCa----CAUGGUCC-------------GGUCGu -5'
19052 3' -53.3 NC_004684.1 + 62276 0.67 0.799654
Target:  5'- gGCCUUCAGcAGGU---CCAGGCgcugcucCAGCGc -3'
miRNA:   3'- -CGGAAGUU-UCCAcauGGUCCG-------GUCGU- -5'
19052 3' -53.3 NC_004684.1 + 41196 0.67 0.800629
Target:  5'- uGCUgaUCAAAGGcg-ACCAGacGCCAGCGg -3'
miRNA:   3'- -CGGa-AGUUUCCacaUGGUC--CGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 47681 0.67 0.800629
Target:  5'- cGCCUucuugUCGAAGGUGaUGCU-GGUUGGCGc -3'
miRNA:   3'- -CGGA-----AGUUUCCAC-AUGGuCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 67091 0.67 0.800629
Target:  5'- gGCCU-CGgcGGccagcgaacucuUGUGCCAGGUguGCAc -3'
miRNA:   3'- -CGGAaGUuuCC------------ACAUGGUCCGguCGU- -5'
19052 3' -53.3 NC_004684.1 + 43074 0.66 0.810272
Target:  5'- cGUCcUCGucGGUGUAggcgacgaagauCCAGGCCGGg- -3'
miRNA:   3'- -CGGaAGUuuCCACAU------------GGUCCGGUCgu -5'
19052 3' -53.3 NC_004684.1 + 2003 0.68 0.716865
Target:  5'- gGCCUgggCGcuGGaccgccccgacguUG-ACCAGGCCAGCGc -3'
miRNA:   3'- -CGGAa--GUuuCC-------------ACaUGGUCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 59441 0.68 0.707095
Target:  5'- gGCCUUgccCAccGGUGUGCgCcGGUCGGCGg -3'
miRNA:   3'- -CGGAA---GUuuCCACAUG-GuCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 49507 0.69 0.674137
Target:  5'- cGCg-UCGGGGGUGUAgCGGcCCAGCGu -3'
miRNA:   3'- -CGgaAGUUUCCACAUgGUCcGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 51722 0.76 0.291226
Target:  5'- cGCCUUCc-AGGUcGUACUGGGCCAGgAa -3'
miRNA:   3'- -CGGAAGuuUCCA-CAUGGUCCGGUCgU- -5'
19052 3' -53.3 NC_004684.1 + 24531 0.74 0.390455
Target:  5'- uGCCaUCuacggcGGUGUGCCGGGCC-GCGa -3'
miRNA:   3'- -CGGaAGuuu---CCACAUGGUCCGGuCGU- -5'
19052 3' -53.3 NC_004684.1 + 43977 0.73 0.457694
Target:  5'- aGCCgugCGcGGGcGUACCcGGCCAGCu -3'
miRNA:   3'- -CGGaa-GUuUCCaCAUGGuCCGGUCGu -5'
19052 3' -53.3 NC_004684.1 + 14703 0.71 0.563224
Target:  5'- cCCUUCGccgcAGGGccUGUACgGGGCCAcGCAa -3'
miRNA:   3'- cGGAAGU----UUCC--ACAUGgUCCGGU-CGU- -5'
19052 3' -53.3 NC_004684.1 + 61142 0.7 0.596309
Target:  5'- gGCCcagCGAcuGGGUGUACUcGGUCAGCc -3'
miRNA:   3'- -CGGaa-GUU--UCCACAUGGuCCGGUCGu -5'
19052 3' -53.3 NC_004684.1 + 60117 0.69 0.640812
Target:  5'- uCCggaaCGAAGGUGUgACCGGGUCGcGCAc -3'
miRNA:   3'- cGGaa--GUUUCCACA-UGGUCCGGU-CGU- -5'
19052 3' -53.3 NC_004684.1 + 63878 0.69 0.640812
Target:  5'- gGCCUUCAucGGgcccagcgGUGCCAGGugguCCAGg- -3'
miRNA:   3'- -CGGAAGUuuCCa-------CAUGGUCC----GGUCgu -5'
19052 3' -53.3 NC_004684.1 + 25860 0.69 0.663055
Target:  5'- gGCCUguUCAAcGGccucgGCCAGGCCGGgCAg -3'
miRNA:   3'- -CGGA--AGUUuCCaca--UGGUCCGGUC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.