miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19052 3' -53.3 NC_004684.1 + 467 0.68 0.717946
Target:  5'- gGCCUUCGccGAGGuUGUggccGCCaAGGCCGcGCc -3'
miRNA:   3'- -CGGAAGU--UUCC-ACA----UGG-UCCGGU-CGu -5'
19052 3' -53.3 NC_004684.1 + 2003 0.68 0.716865
Target:  5'- gGCCUgggCGcuGGaccgccccgacguUG-ACCAGGCCAGCGc -3'
miRNA:   3'- -CGGAa--GUuuCC-------------ACaUGGUCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 2795 0.7 0.607412
Target:  5'- aGCCggaaccgCAAcuGGUcgacGUACCGGGCCGGUAc -3'
miRNA:   3'- -CGGaa-----GUUu-CCA----CAUGGUCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 5672 0.74 0.409006
Target:  5'- aGCCguggUCGGAGGUG-GCCGGGgcCCGGCc -3'
miRNA:   3'- -CGGa---AGUUUCCACaUGGUCC--GGUCGu -5'
19052 3' -53.3 NC_004684.1 + 6834 0.73 0.426164
Target:  5'- aGCUggucgagUUCGAGGGUGUcgacggcACCGGGCgCGGCGa -3'
miRNA:   3'- -CGG-------AAGUUUCCACA-------UGGUCCG-GUCGU- -5'
19052 3' -53.3 NC_004684.1 + 7641 0.7 0.629673
Target:  5'- cGCCguggCGGgcguGGUG-ACCGGGUCGGCGg -3'
miRNA:   3'- -CGGaa--GUUu---CCACaUGGUCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 9545 0.71 0.563224
Target:  5'- cGCUggCAAucGGGcggGUACCGgcGGCCAGCAc -3'
miRNA:   3'- -CGGaaGUU--UCCa--CAUGGU--CCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 11993 0.66 0.841565
Target:  5'- cGCCagcgcagCGAAGGUuuccggcgcgauCCGGGCCAGCu -3'
miRNA:   3'- -CGGaa-----GUUUCCAcau---------GGUCCGGUCGu -5'
19052 3' -53.3 NC_004684.1 + 14297 0.66 0.838011
Target:  5'- gGCCUUgCAGgccgccgcgcAGGUGUacGCCGGuaCCAGCGa -3'
miRNA:   3'- -CGGAA-GUU----------UCCACA--UGGUCc-GGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 14703 0.71 0.563224
Target:  5'- cCCUUCGccgcAGGGccUGUACgGGGCCAcGCAa -3'
miRNA:   3'- cGGAAGU----UUCC--ACAUGgUCCGGU-CGU- -5'
19052 3' -53.3 NC_004684.1 + 15871 0.71 0.574207
Target:  5'- aCCUggaGAAGGUGUcccGCCAGG-CGGCGg -3'
miRNA:   3'- cGGAag-UUUCCACA---UGGUCCgGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 17399 0.69 0.696169
Target:  5'- cCCggUCAGAuuguggauGGUGUGCCGGuGCaCAGCGa -3'
miRNA:   3'- cGGa-AGUUU--------CCACAUGGUC-CG-GUCGU- -5'
19052 3' -53.3 NC_004684.1 + 18381 0.68 0.728711
Target:  5'- gGCCgaucugUUCAGcgGGGUcggGCCcGGCCAGCAg -3'
miRNA:   3'- -CGG------AAGUU--UCCAca-UGGuCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 21865 0.72 0.467801
Target:  5'- cGCCggUCGAagAGGUGgaugagcaggGCCAGGCCAucGCGg -3'
miRNA:   3'- -CGGa-AGUU--UCCACa---------UGGUCCGGU--CGU- -5'
19052 3' -53.3 NC_004684.1 + 24531 0.74 0.390455
Target:  5'- uGCCaUCuacggcGGUGUGCCGGGCC-GCGa -3'
miRNA:   3'- -CGGaAGuuu---CCACAUGGUCCGGuCGU- -5'
19052 3' -53.3 NC_004684.1 + 24974 0.66 0.838011
Target:  5'- -gCUUCc--GGUGUcCCAGGgCGGCAu -3'
miRNA:   3'- cgGAAGuuuCCACAuGGUCCgGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 25710 0.67 0.790805
Target:  5'- cGCCgcgcuGGGUGuUGCCgAGGUCGGCc -3'
miRNA:   3'- -CGGaaguuUCCAC-AUGG-UCCGGUCGu -5'
19052 3' -53.3 NC_004684.1 + 25826 0.66 0.855412
Target:  5'- cGCCgaagCA-AGGUGUcgcACCcGGCCAGg- -3'
miRNA:   3'- -CGGaa--GUuUCCACA---UGGuCCGGUCgu -5'
19052 3' -53.3 NC_004684.1 + 25860 0.69 0.663055
Target:  5'- gGCCUguUCAAcGGccucgGCCAGGCCGGgCAg -3'
miRNA:   3'- -CGGA--AGUUuCCaca--UGGUCCGGUC-GU- -5'
19052 3' -53.3 NC_004684.1 + 26153 1.11 0.00127
Target:  5'- gGCCUUCAAAGGUGUACCAGGCCAGCAg -3'
miRNA:   3'- -CGGAAGUUUCCACAUGGUCCGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.