miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19053 5' -53.5 NC_004684.1 + 25992 1.15 0.001011
Target:  5'- gCCACCGCGACGGUAGGUCGAAUAGCCa -3'
miRNA:   3'- -GGUGGCGCUGCCAUCCAGCUUAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 55842 0.77 0.314521
Target:  5'- gCCGCUGUGguuGCGGggcGGGUCGAuGUGGCCc -3'
miRNA:   3'- -GGUGGCGC---UGCCa--UCCAGCU-UAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 52249 0.76 0.354194
Target:  5'- gCCACaGCGGCGGUAcGUCGAAgcUGGCg -3'
miRNA:   3'- -GGUGgCGCUGCCAUcCAGCUU--AUCGg -5'
19053 5' -53.5 NC_004684.1 + 45862 0.76 0.37964
Target:  5'- aCCACCGCcagcucGGUGGUGGuGUCGA-UGGCCg -3'
miRNA:   3'- -GGUGGCG------CUGCCAUC-CAGCUuAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 21118 0.75 0.42375
Target:  5'- gCCGCCGCGACGugauccuGUGGGaCGAGUuccaccacGCCg -3'
miRNA:   3'- -GGUGGCGCUGC-------CAUCCaGCUUAu-------CGG- -5'
19053 5' -53.5 NC_004684.1 + 399 0.74 0.453191
Target:  5'- aCCGCCGUGGCGGgcaagcUGGG-CGAcUGGCa -3'
miRNA:   3'- -GGUGGCGCUGCC------AUCCaGCUuAUCGg -5'
19053 5' -53.5 NC_004684.1 + 24770 0.74 0.468816
Target:  5'- gCACCgGCGGCGGcgggggaggugccGGGUCGAAgguGCCg -3'
miRNA:   3'- gGUGG-CGCUGCCa------------UCCAGCUUau-CGG- -5'
19053 5' -53.5 NC_004684.1 + 29972 0.74 0.482711
Target:  5'- aCCACCGUGGCGGU--GUCGAuggacAGCg -3'
miRNA:   3'- -GGUGGCGCUGCCAucCAGCUua---UCGg -5'
19053 5' -53.5 NC_004684.1 + 33412 0.73 0.492757
Target:  5'- uUCACCaaguaGGCGGUAGGUCcGAcGGCCa -3'
miRNA:   3'- -GGUGGcg---CUGCCAUCCAGcUUaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 34652 0.73 0.492757
Target:  5'- uCgGCCGCGACGuaccGGUCGAuguaGGCCg -3'
miRNA:   3'- -GgUGGCGCUGCcau-CCAGCUua--UCGG- -5'
19053 5' -53.5 NC_004684.1 + 7639 0.73 0.502897
Target:  5'- cUCGCCGUGGCGGgcguggugaccGGGUCGGc-GGCCu -3'
miRNA:   3'- -GGUGGCGCUGCCa----------UCCAGCUuaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 33274 0.73 0.523442
Target:  5'- gCACCGCGACgagcacacagcaGGUGGuGcucgcgCGggUGGCCu -3'
miRNA:   3'- gGUGGCGCUG------------CCAUC-Ca-----GCuuAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 56516 0.73 0.533835
Target:  5'- gUCACCgGCGuCGGUgAGGUCGAGUucuCCg -3'
miRNA:   3'- -GGUGG-CGCuGCCA-UCCAGCUUAuc-GG- -5'
19053 5' -53.5 NC_004684.1 + 47319 0.73 0.533835
Target:  5'- gUCACCGUGucgcCGGUgugGGcGUCGAgcAUGGCCa -3'
miRNA:   3'- -GGUGGCGCu---GCCA---UC-CAGCU--UAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 21534 0.72 0.543252
Target:  5'- aCCACCGagcuGGCGGU-GGUgGAagaggucaaggacGUGGCCg -3'
miRNA:   3'- -GGUGGCg---CUGCCAuCCAgCU-------------UAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 15279 0.72 0.554833
Target:  5'- gCCugCGCGGugcaccugcUGGgccuGGUCGAcGUGGCCg -3'
miRNA:   3'- -GGugGCGCU---------GCCau--CCAGCU-UAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 59858 0.72 0.565423
Target:  5'- gCCGCCaCGGCGGccAGGUCGGuccgGGCa -3'
miRNA:   3'- -GGUGGcGCUGCCa-UCCAGCUua--UCGg -5'
19053 5' -53.5 NC_004684.1 + 60269 0.72 0.576066
Target:  5'- gUACCuCGGCGGUGgcGGUUGcGUGGCCc -3'
miRNA:   3'- gGUGGcGCUGCCAU--CCAGCuUAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 9807 0.72 0.576066
Target:  5'- aCCACCGU--CGGUAGGUUGcgggcGAUgucGGCCa -3'
miRNA:   3'- -GGUGGCGcuGCCAUCCAGC-----UUA---UCGG- -5'
19053 5' -53.5 NC_004684.1 + 46486 0.71 0.597476
Target:  5'- -uGCCGCuGCGGUAGGcgUUGGA-GGCCa -3'
miRNA:   3'- ggUGGCGcUGCCAUCC--AGCUUaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.