miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19053 5' -53.5 NC_004684.1 + 19550 0.69 0.715297
Target:  5'- gCGCCG-GGCGGUgccAGGUCuccgGGCCu -3'
miRNA:   3'- gGUGGCgCUGCCA---UCCAGcuuaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 53002 0.71 0.651342
Target:  5'- cCUGCgGCGACGGcccGGuGUCGGucAGCCa -3'
miRNA:   3'- -GGUGgCGCUGCCa--UC-CAGCUuaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 36676 0.71 0.651342
Target:  5'- aCCAUCGaCGGCGGcgagacUGGGUCGGAguccgGGUa -3'
miRNA:   3'- -GGUGGC-GCUGCC------AUCCAGCUUa----UCGg -5'
19053 5' -53.5 NC_004684.1 + 46174 0.7 0.669619
Target:  5'- aCAUCGUGGCGGUgaacccgcacagguAGGcgugCGuAUAGCCg -3'
miRNA:   3'- gGUGGCGCUGCCA--------------UCCa---GCuUAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 27785 0.7 0.672835
Target:  5'- cCCGCC-CGACGGUGcgcggcGGuUCGGuccUGGCCu -3'
miRNA:   3'- -GGUGGcGCUGCCAU------CC-AGCUu--AUCGG- -5'
19053 5' -53.5 NC_004684.1 + 24667 0.7 0.683532
Target:  5'- uUCGCCGaCGGCGGUgAGGUUcca-GGCCu -3'
miRNA:   3'- -GGUGGC-GCUGCCA-UCCAGcuuaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 20812 0.7 0.704773
Target:  5'- gCCAgCCGCGACGacUGGGcUGAGUuccuGGCCa -3'
miRNA:   3'- -GGU-GGCGCUGCc-AUCCaGCUUA----UCGG- -5'
19053 5' -53.5 NC_004684.1 + 41425 0.7 0.704773
Target:  5'- cCC-CCGUGGCGGU-GGUgCGGcgGuGCCg -3'
miRNA:   3'- -GGuGGCGCUGCCAuCCA-GCUuaU-CGG- -5'
19053 5' -53.5 NC_004684.1 + 62957 0.7 0.704773
Target:  5'- gCGCCGaCGAUGGUGGcGugcUCGGuggugcgcacGUGGCCg -3'
miRNA:   3'- gGUGGC-GCUGCCAUC-C---AGCU----------UAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 42148 0.71 0.651342
Target:  5'- gCCACCaCGcACGGccuaUGGGUCGAGagcGCCg -3'
miRNA:   3'- -GGUGGcGC-UGCC----AUCCAGCUUau-CGG- -5'
19053 5' -53.5 NC_004684.1 + 40867 0.71 0.630859
Target:  5'- aCGCCGUGGCGcUAGGaaugacucuggagaaCGGAUGGCCc -3'
miRNA:   3'- gGUGGCGCUGCcAUCCa--------------GCUUAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 53789 0.71 0.608227
Target:  5'- aCCGgCGCGGCGcUGGGaUCGggUugcGCCu -3'
miRNA:   3'- -GGUgGCGCUGCcAUCC-AGCuuAu--CGG- -5'
19053 5' -53.5 NC_004684.1 + 29972 0.74 0.482711
Target:  5'- aCCACCGUGGCGGU--GUCGAuggacAGCg -3'
miRNA:   3'- -GGUGGCGCUGCCAucCAGCUua---UCGg -5'
19053 5' -53.5 NC_004684.1 + 33274 0.73 0.523442
Target:  5'- gCACCGCGACgagcacacagcaGGUGGuGcucgcgCGggUGGCCu -3'
miRNA:   3'- gGUGGCGCUG------------CCAUC-Ca-----GCuuAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 56516 0.73 0.533835
Target:  5'- gUCACCgGCGuCGGUgAGGUCGAGUucuCCg -3'
miRNA:   3'- -GGUGG-CGCuGCCA-UCCAGCUUAuc-GG- -5'
19053 5' -53.5 NC_004684.1 + 47319 0.73 0.533835
Target:  5'- gUCACCGUGucgcCGGUgugGGcGUCGAgcAUGGCCa -3'
miRNA:   3'- -GGUGGCGCu---GCCA---UC-CAGCU--UAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 21534 0.72 0.543252
Target:  5'- aCCACCGagcuGGCGGU-GGUgGAagaggucaaggacGUGGCCg -3'
miRNA:   3'- -GGUGGCg---CUGCCAuCCAgCU-------------UAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 59858 0.72 0.565423
Target:  5'- gCCGCCaCGGCGGccAGGUCGGuccgGGCa -3'
miRNA:   3'- -GGUGGcGCUGCCa-UCCAGCUua--UCGg -5'
19053 5' -53.5 NC_004684.1 + 60269 0.72 0.576066
Target:  5'- gUACCuCGGCGGUGgcGGUUGcGUGGCCc -3'
miRNA:   3'- gGUGGcGCUGCCAU--CCAGCuUAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 46486 0.71 0.597476
Target:  5'- -uGCCGCuGCGGUAGGcgUUGGA-GGCCa -3'
miRNA:   3'- ggUGGCGcUGCCAUCC--AGCUUaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.