miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19053 5' -53.5 NC_004684.1 + 399 0.74 0.453191
Target:  5'- aCCGCCGUGGCGGgcaagcUGGG-CGAcUGGCa -3'
miRNA:   3'- -GGUGGCGCUGCC------AUCCaGCUuAUCGg -5'
19053 5' -53.5 NC_004684.1 + 1737 0.69 0.715297
Target:  5'- cCUACuCGgGACcgGGUAGGUCGGGaccggAGCUg -3'
miRNA:   3'- -GGUG-GCgCUG--CCAUCCAGCUUa----UCGG- -5'
19053 5' -53.5 NC_004684.1 + 2826 0.66 0.873557
Target:  5'- uCCugCGCG--GGUGGGUgGAugAGCa -3'
miRNA:   3'- -GGugGCGCugCCAUCCAgCUuaUCGg -5'
19053 5' -53.5 NC_004684.1 + 3405 0.67 0.841046
Target:  5'- aCCGCCGCcaagguGAUGG-AGGUcuaccgcaaggaCGAcaccGUGGCCa -3'
miRNA:   3'- -GGUGGCG------CUGCCaUCCA------------GCU----UAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 5391 0.68 0.785184
Target:  5'- cCCGUCGCGauugugcGCGGcGGGUgCGggUGGCUc -3'
miRNA:   3'- -GGUGGCGC-------UGCCaUCCA-GCuuAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 5647 0.67 0.841902
Target:  5'- uUCGcCCGUGGCGGaUuccugccucagccguGGUCGGagGUGGCCg -3'
miRNA:   3'- -GGU-GGCGCUGCC-Au--------------CCAGCU--UAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 5961 0.66 0.881102
Target:  5'- -gGCCGCGcCGGUGaG-CGAccGGCCg -3'
miRNA:   3'- ggUGGCGCuGCCAUcCaGCUuaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 6069 0.66 0.865773
Target:  5'- aCGCCGCGcUGGUAGc-CGAu--GCCg -3'
miRNA:   3'- gGUGGCGCuGCCAUCcaGCUuauCGG- -5'
19053 5' -53.5 NC_004684.1 + 6168 0.68 0.792882
Target:  5'- gCCAgCguGCGGCGGUAGGcacCGGgcagguacaugucgAUGGCCu -3'
miRNA:   3'- -GGUgG--CGCUGCCAUCCa--GCU--------------UAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 7639 0.73 0.502897
Target:  5'- cUCGCCGUGGCGGgcguggugaccGGGUCGGc-GGCCu -3'
miRNA:   3'- -GGUGGCGCUGCCa----------UCCAGCUuaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 7710 0.66 0.865773
Target:  5'- gUCGCCGUGGCGcu-GGcCGug-AGCCa -3'
miRNA:   3'- -GGUGGCGCUGCcauCCaGCuuaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 8035 0.67 0.835866
Target:  5'- aCACCGUGcGCGuGUucaacaccaacggccGGGUcguggcCGAGUGGCCa -3'
miRNA:   3'- gGUGGCGC-UGC-CA---------------UCCA------GCUUAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 9531 0.68 0.786151
Target:  5'- uCCgACCGCGAgcUGGUGcgccGGUUGG--AGCCg -3'
miRNA:   3'- -GG-UGGCGCU--GCCAU----CCAGCUuaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 9577 0.69 0.746351
Target:  5'- aCCGCCGgGACcaGGccguGGUCGggUucccaggucuuGGCCc -3'
miRNA:   3'- -GGUGGCgCUG--CCau--CCAGCuuA-----------UCGG- -5'
19053 5' -53.5 NC_004684.1 + 9807 0.72 0.576066
Target:  5'- aCCACCGU--CGGUAGGUUGcgggcGAUgucGGCCa -3'
miRNA:   3'- -GGUGGCGcuGCCAUCCAGC-----UUA---UCGG- -5'
19053 5' -53.5 NC_004684.1 + 10246 0.71 0.608227
Target:  5'- aCCGCCGCcAUGG-AGG-CGAAccAGCCg -3'
miRNA:   3'- -GGUGGCGcUGCCaUCCaGCUUa-UCGG- -5'
19053 5' -53.5 NC_004684.1 + 10558 0.68 0.795743
Target:  5'- aCCAgCUGCGccaGGU-GGUCGuggucGAUGGCCa -3'
miRNA:   3'- -GGU-GGCGCug-CCAuCCAGC-----UUAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 10784 0.68 0.795743
Target:  5'- aCAcCCGCGACGGc--GUCGGcaccGUAGCg -3'
miRNA:   3'- gGU-GGCGCUGCCaucCAGCU----UAUCGg -5'
19053 5' -53.5 NC_004684.1 + 10882 0.67 0.832371
Target:  5'- cUCACCGaCGcCGGUgaccacccGGGUCGGcgcGUacaGGCCg -3'
miRNA:   3'- -GGUGGC-GCuGCCA--------UCCAGCU---UA---UCGG- -5'
19053 5' -53.5 NC_004684.1 + 11522 0.68 0.795743
Target:  5'- gCACCGCu-CGGUGGGcCug--GGCCa -3'
miRNA:   3'- gGUGGCGcuGCCAUCCaGcuuaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.