miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19066 5' -54.7 NC_004684.1 + 21024 1.1 0.00124
Target:  5'- gGCAUCGUGAUGGCCGAGCACGACGACc -3'
miRNA:   3'- -CGUAGCACUACCGGCUCGUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 46284 0.79 0.189803
Target:  5'- aCGUCGcGgcGGCCGAGCGCGuuGCGGCg -3'
miRNA:   3'- cGUAGCaCuaCCGGCUCGUGC--UGCUG- -5'
19066 5' -54.7 NC_004684.1 + 26715 0.77 0.246264
Target:  5'- uCGUCGccaccuUGcUGGCCGAGCGCGACuGGCg -3'
miRNA:   3'- cGUAGC------ACuACCGGCUCGUGCUG-CUG- -5'
19066 5' -54.7 NC_004684.1 + 63139 0.77 0.246264
Target:  5'- -gGUgGUGGUGGCCGAGUGCGGCu-- -3'
miRNA:   3'- cgUAgCACUACCGGCUCGUGCUGcug -5'
19066 5' -54.7 NC_004684.1 + 60079 0.76 0.277303
Target:  5'- cGCGUCGgccAUGGCCGGGUucgcguggugcaguGCGGCGAUg -3'
miRNA:   3'- -CGUAGCac-UACCGGCUCG--------------UGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 58419 0.75 0.300911
Target:  5'- uGguUCGUGAUGGCCucGCAcagcaucuccacCGGCGGCa -3'
miRNA:   3'- -CguAGCACUACCGGcuCGU------------GCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 60594 0.75 0.331567
Target:  5'- gGCGUCGUaGUGGCCGucguccaguGCAcCGGCGAUg -3'
miRNA:   3'- -CGUAGCAcUACCGGCu--------CGU-GCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 35635 0.74 0.345275
Target:  5'- cGCG-CGUGGUGGCCGAGUcguuccuggagucgACaaagGACGGCg -3'
miRNA:   3'- -CGUaGCACUACCGGCUCG--------------UG----CUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 17994 0.73 0.39057
Target:  5'- ----gGUGGUGGCgcugacCGAGUACGGCGGCa -3'
miRNA:   3'- cguagCACUACCG------GCUCGUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 37848 0.73 0.408642
Target:  5'- cGCugagCGUGAUGGCCGcGCACcauuGGCGcACg -3'
miRNA:   3'- -CGua--GCACUACCGGCuCGUG----CUGC-UG- -5'
19066 5' -54.7 NC_004684.1 + 53396 0.73 0.408642
Target:  5'- uGCAcCGUGuccagGUGGCCGGGCugGccugcgccgcGCGACu -3'
miRNA:   3'- -CGUaGCAC-----UACCGGCUCGugC----------UGCUG- -5'
19066 5' -54.7 NC_004684.1 + 5924 0.73 0.427227
Target:  5'- aCAUCGacuaGGUGGCacgCGAGCAcCGGCGGCg -3'
miRNA:   3'- cGUAGCa---CUACCG---GCUCGU-GCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 27796 0.72 0.436705
Target:  5'- aGCGcugCGUGGUGGcCCGAGCAgcuguUGAgGGCg -3'
miRNA:   3'- -CGUa--GCACUACC-GGCUCGU-----GCUgCUG- -5'
19066 5' -54.7 NC_004684.1 + 14052 0.72 0.446304
Target:  5'- aGCAagGcGGUGGCguucgucaacguCGAGUACGACGACc -3'
miRNA:   3'- -CGUagCaCUACCG------------GCUCGUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 12058 0.72 0.446304
Target:  5'- gGCGgcUCGccUGGccGCCGAGCGCGACGAg -3'
miRNA:   3'- -CGU--AGC--ACUacCGGCUCGUGCUGCUg -5'
19066 5' -54.7 NC_004684.1 + 18666 0.72 0.456019
Target:  5'- cCAUCGUGccGccGCUGGGCGCGACGGu -3'
miRNA:   3'- cGUAGCACuaC--CGGCUCGUGCUGCUg -5'
19066 5' -54.7 NC_004684.1 + 17987 0.72 0.456019
Target:  5'- gGUAUcCGUGAcaaGGCUGAGguCGAUGGCg -3'
miRNA:   3'- -CGUA-GCACUa--CCGGCUCguGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 29419 0.72 0.475783
Target:  5'- cGCGUCGgcaacGAUGGCCuccAGgACGAUGGCc -3'
miRNA:   3'- -CGUAGCa----CUACCGGc--UCgUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 47030 0.71 0.506199
Target:  5'- aCGUCGgGGUGGCCu-GCGCGGUGACg -3'
miRNA:   3'- cGUAGCaCUACCGGcuCGUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 376 0.71 0.520677
Target:  5'- cCAUCGUGGUGccggucaggaucaccGCCGuggcgggcaAGCugGGCGACu -3'
miRNA:   3'- cGUAGCACUAC---------------CGGC---------UCGugCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.