miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19066 5' -54.7 NC_004684.1 + 62987 0.68 0.688146
Target:  5'- cGCA-CGUGGccggUGGCCGGGaaCGCGAUGcGCa -3'
miRNA:   3'- -CGUaGCACU----ACCGGCUC--GUGCUGC-UG- -5'
19066 5' -54.7 NC_004684.1 + 11649 0.7 0.59077
Target:  5'- gGCAUCGgccacGCC-AGCACGGCGGCc -3'
miRNA:   3'- -CGUAGCacuacCGGcUCGUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 52904 0.69 0.612402
Target:  5'- aGCGUCc----GGCC-AGCACGGCGGCg -3'
miRNA:   3'- -CGUAGcacuaCCGGcUCGUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 457 0.69 0.612402
Target:  5'- cGCAUCGUGGccgUGGacaaCCGGGCcaGCGAgguCGGCa -3'
miRNA:   3'- -CGUAGCACU---ACC----GGCUCG--UGCU---GCUG- -5'
19066 5' -54.7 NC_004684.1 + 43629 0.69 0.623248
Target:  5'- ----gGUG-UGGCCGAGCGCGGUGAg -3'
miRNA:   3'- cguagCACuACCGGCUCGUGCUGCUg -5'
19066 5' -54.7 NC_004684.1 + 24891 0.69 0.623248
Target:  5'- cCAUCGUGGcuacgagaUGGCCGccgccgcgaucAGCGCGcuggGCGGCg -3'
miRNA:   3'- cGUAGCACU--------ACCGGC-----------UCGUGC----UGCUG- -5'
19066 5' -54.7 NC_004684.1 + 15631 0.69 0.655793
Target:  5'- cGCG-CGcGA-GGCCGGguuGCugGACGACu -3'
miRNA:   3'- -CGUaGCaCUaCCGGCU---CGugCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 10082 0.68 0.666613
Target:  5'- ---cCGUGGUGcGCCGGGUGCucagccacaccGGCGACa -3'
miRNA:   3'- cguaGCACUAC-CGGCUCGUG-----------CUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 18436 0.68 0.688146
Target:  5'- gGCGgccgaCGUGGcucCCGAGCAgGACGACg -3'
miRNA:   3'- -CGUa----GCACUaccGGCUCGUgCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 56154 0.7 0.58
Target:  5'- ---gCGUGGcccUGGCCGAcgACGGCGACg -3'
miRNA:   3'- cguaGCACU---ACCGGCUcgUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 33818 0.7 0.569272
Target:  5'- gGCGUCGgcgggcGGUGuGCCcGGCGgCGGCGGCa -3'
miRNA:   3'- -CGUAGCa-----CUAC-CGGcUCGU-GCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 10627 0.7 0.558594
Target:  5'- cGUAUgggCGUGcUGGCCGAGgACGAgGAg -3'
miRNA:   3'- -CGUA---GCACuACCGGCUCgUGCUgCUg -5'
19066 5' -54.7 NC_004684.1 + 35635 0.74 0.345275
Target:  5'- cGCG-CGUGGUGGCCGAGUcguuccuggagucgACaaagGACGGCg -3'
miRNA:   3'- -CGUaGCACUACCGGCUCG--------------UG----CUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 37848 0.73 0.408642
Target:  5'- cGCugagCGUGAUGGCCGcGCACcauuGGCGcACg -3'
miRNA:   3'- -CGua--GCACUACCGGCuCGUG----CUGC-UG- -5'
19066 5' -54.7 NC_004684.1 + 12058 0.72 0.446304
Target:  5'- gGCGgcUCGccUGGccGCCGAGCGCGACGAg -3'
miRNA:   3'- -CGU--AGC--ACUacCGGCUCGUGCUGCUg -5'
19066 5' -54.7 NC_004684.1 + 17987 0.72 0.456019
Target:  5'- gGUAUcCGUGAcaaGGCUGAGguCGAUGGCg -3'
miRNA:   3'- -CGUA-GCACUa--CCGGCUCguGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 18666 0.72 0.456019
Target:  5'- cCAUCGUGccGccGCUGGGCGCGACGGu -3'
miRNA:   3'- cGUAGCACuaC--CGGCUCGUGCUGCUg -5'
19066 5' -54.7 NC_004684.1 + 34878 0.71 0.526932
Target:  5'- cGCGaCGUGAaGGCCuuGGCcaACGACGGCa -3'
miRNA:   3'- -CGUaGCACUaCCGGc-UCG--UGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 50902 0.71 0.526932
Target:  5'- uCGUCGUGcAUGGCCagcuGCACGugGcCg -3'
miRNA:   3'- cGUAGCAC-UACCGGcu--CGUGCugCuG- -5'
19066 5' -54.7 NC_004684.1 + 611 0.71 0.537417
Target:  5'- gGCcgCcUGAccuggacgaccUGGCCGAcgaGCACGGCGACc -3'
miRNA:   3'- -CGuaGcACU-----------ACCGGCU---CGUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.