miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19066 5' -54.7 NC_004684.1 + 371 0.66 0.800508
Target:  5'- cCAUgCGcGAccUGGCCGAGaC-CGACGGCc -3'
miRNA:   3'- cGUA-GCaCU--ACCGGCUC-GuGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 376 0.71 0.520677
Target:  5'- cCAUCGUGGUGccggucaggaucaccGCCGuggcgggcaAGCugGGCGACu -3'
miRNA:   3'- cGUAGCACUAC---------------CGGC---------UCGugCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 457 0.69 0.612402
Target:  5'- cGCAUCGUGGccgUGGacaaCCGGGCcaGCGAgguCGGCa -3'
miRNA:   3'- -CGUAGCACU---ACC----GGCUCG--UGCU---GCUG- -5'
19066 5' -54.7 NC_004684.1 + 611 0.71 0.537417
Target:  5'- gGCcgCcUGAccuggacgaccUGGCCGAcgaGCACGGCGACc -3'
miRNA:   3'- -CGuaGcACU-----------ACCGGCU---CGUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 2061 0.68 0.688145
Target:  5'- cCAUCGUGGccugccuggcgcUGGCCGugguGCACaGCGAg -3'
miRNA:   3'- cGUAGCACU------------ACCGGCu---CGUGcUGCUg -5'
19066 5' -54.7 NC_004684.1 + 3282 0.69 0.634101
Target:  5'- cGCAccgaguUCGaGGccaUGGCacagcgCGAGCGCGACGACg -3'
miRNA:   3'- -CGU------AGCaCU---ACCG------GCUCGUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 3569 0.66 0.809908
Target:  5'- -gGUCGUGGUGcGCCacagcGGGgACGugGAg -3'
miRNA:   3'- cgUAGCACUAC-CGG-----CUCgUGCugCUg -5'
19066 5' -54.7 NC_004684.1 + 3669 0.66 0.781202
Target:  5'- uCAUCGUacGGUGGCCcGGCAccgccuccCGcACGACa -3'
miRNA:   3'- cGUAGCA--CUACCGGcUCGU--------GC-UGCUG- -5'
19066 5' -54.7 NC_004684.1 + 4792 0.68 0.6774
Target:  5'- cGCcUCGgcgcGGUGGCCGAcCGCaACGGCa -3'
miRNA:   3'- -CGuAGCa---CUACCGGCUcGUGcUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 5239 0.69 0.644953
Target:  5'- aGCccugCGcaa-GGCCGGGCACGGCGAg -3'
miRNA:   3'- -CGua--GCacuaCCGGCUCGUGCUGCUg -5'
19066 5' -54.7 NC_004684.1 + 5924 0.73 0.427227
Target:  5'- aCAUCGacuaGGUGGCacgCGAGCAcCGGCGGCg -3'
miRNA:   3'- cGUAGCa---CUACCG---GCUCGU-GCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 6387 0.66 0.781202
Target:  5'- cGCAgCGUGuuggcgaaguUGGCCGAGgUguacagcucgGCGGCGGCg -3'
miRNA:   3'- -CGUaGCACu---------ACCGGCUC-G----------UGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 6815 0.67 0.771319
Target:  5'- cGCggCGUGGagacauaccagcUGGUCGAGUucgaggguguCGACGGCa -3'
miRNA:   3'- -CGuaGCACU------------ACCGGCUCGu---------GCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 7647 0.69 0.623248
Target:  5'- gGCGggCGUGGUGaCCGGGU-CGGCGGCc -3'
miRNA:   3'- -CGUa-GCACUACcGGCUCGuGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 10082 0.68 0.666613
Target:  5'- ---cCGUGGUGcGCCGGGUGCucagccacaccGGCGACa -3'
miRNA:   3'- cguaGCACUAC-CGGCUCGUG-----------CUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 10627 0.7 0.558594
Target:  5'- cGUAUgggCGUGcUGGCCGAGgACGAgGAg -3'
miRNA:   3'- -CGUA---GCACuACCGGCUCgUGCUgCUg -5'
19066 5' -54.7 NC_004684.1 + 11382 0.66 0.809908
Target:  5'- aGCGUgGUGGUGcgcgacuuGCCGcGCGCGAUGu- -3'
miRNA:   3'- -CGUAgCACUAC--------CGGCuCGUGCUGCug -5'
19066 5' -54.7 NC_004684.1 + 11649 0.7 0.59077
Target:  5'- gGCAUCGgccacGCC-AGCACGGCGGCc -3'
miRNA:   3'- -CGUAGCacuacCGGcUCGUGCUGCUG- -5'
19066 5' -54.7 NC_004684.1 + 12058 0.72 0.446304
Target:  5'- gGCGgcUCGccUGGccGCCGAGCGCGACGAg -3'
miRNA:   3'- -CGU--AGC--ACUacCGGCUCGUGCUGCUg -5'
19066 5' -54.7 NC_004684.1 + 14052 0.72 0.446304
Target:  5'- aGCAagGcGGUGGCguucgucaacguCGAGUACGACGACc -3'
miRNA:   3'- -CGUagCaCUACCG------------GCUCGUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.