miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19067 5' -61.9 NC_004684.1 + 20926 1.09 0.000253
Target:  5'- gGCAAGCGCGUGGUGGCCCUGGCCCACc -3'
miRNA:   3'- -CGUUCGCGCACCACCGGGACCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 58388 0.83 0.027646
Target:  5'- gGCAccGCGCGUGGaGGCCUUGGCCCGg -3'
miRNA:   3'- -CGUu-CGCGCACCaCCGGGACCGGGUg -5'
19067 5' -61.9 NC_004684.1 + 40017 0.78 0.056693
Target:  5'- cGCGcuccGGCGCGaUGGUGGCCUUGggcaucaugccgguGCCCACg -3'
miRNA:   3'- -CGU----UCGCGC-ACCACCGGGAC--------------CGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 22255 0.75 0.100803
Target:  5'- cGCAGGCGCGagcaugggaccgccUGGcggcGGCCaaGGCCCGCg -3'
miRNA:   3'- -CGUUCGCGC--------------ACCa---CCGGgaCCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 48979 0.74 0.110186
Target:  5'- gGCGGGCGCGUcGGU-GCCCUgcuggccgGGCCCGa -3'
miRNA:   3'- -CGUUCGCGCA-CCAcCGGGA--------CCGGGUg -5'
19067 5' -61.9 NC_004684.1 + 23285 0.74 0.110186
Target:  5'- -gGAGCGCGUGGUcGGCaCgCUGGaCCGCa -3'
miRNA:   3'- cgUUCGCGCACCA-CCG-G-GACCgGGUG- -5'
19067 5' -61.9 NC_004684.1 + 13267 0.74 0.113187
Target:  5'- cGCcAGCGCGcUGGUGGCCgccgguggCUGGUgCGCg -3'
miRNA:   3'- -CGuUCGCGC-ACCACCGG--------GACCGgGUG- -5'
19067 5' -61.9 NC_004684.1 + 5409 0.74 0.122656
Target:  5'- gGCGGGUGCG-GGUGGCUCaUGGUgUACa -3'
miRNA:   3'- -CGUUCGCGCaCCACCGGG-ACCGgGUG- -5'
19067 5' -61.9 NC_004684.1 + 55856 0.74 0.122656
Target:  5'- -gGGGCGgGUcgauGUGGCCCaGGCCCACc -3'
miRNA:   3'- cgUUCGCgCAc---CACCGGGaCCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 36100 0.74 0.125972
Target:  5'- gGCAAGCGCGcggugGGUGcGCCUgcUGGCCUuCg -3'
miRNA:   3'- -CGUUCGCGCa----CCAC-CGGG--ACCGGGuG- -5'
19067 5' -61.9 NC_004684.1 + 65843 0.73 0.136425
Target:  5'- aGCAGGCGguUGUGGgGGCCgCUGGUgCCACc -3'
miRNA:   3'- -CGUUCGC--GCACCaCCGG-GACCG-GGUG- -5'
19067 5' -61.9 NC_004684.1 + 58154 0.73 0.143831
Target:  5'- cGCcAGCGuCGgcagcaGGUucgGGUCCUGGCCCACc -3'
miRNA:   3'- -CGuUCGC-GCa-----CCA---CCGGGACCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 12075 0.73 0.14767
Target:  5'- cCGAGCGCGacGaGGUgCUGGCCCGCg -3'
miRNA:   3'- cGUUCGCGCacCaCCGgGACCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 30223 0.73 0.14767
Target:  5'- uGCucGGCGCGacGUGGCCCUcGGCgCGCu -3'
miRNA:   3'- -CGu-UCGCGCacCACCGGGA-CCGgGUG- -5'
19067 5' -61.9 NC_004684.1 + 14378 0.72 0.172721
Target:  5'- -aGAGCGCGcUGGUGGCgCUGGaCgACg -3'
miRNA:   3'- cgUUCGCGC-ACCACCGgGACCgGgUG- -5'
19067 5' -61.9 NC_004684.1 + 46119 0.72 0.172721
Target:  5'- cCGGGCGCGcgugccggGGUGGUugaCCUGGCgCACg -3'
miRNA:   3'- cGUUCGCGCa-------CCACCG---GGACCGgGUG- -5'
19067 5' -61.9 NC_004684.1 + 55582 0.72 0.174519
Target:  5'- aGC-GGCGCGcUcgcgcccuucuccacGGUGGCCUggucGGCCCACg -3'
miRNA:   3'- -CGuUCGCGC-A---------------CCACCGGGa---CCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 51452 0.71 0.181881
Target:  5'- aGCucauGCGCccGGUGGCCgaGGCCCcCa -3'
miRNA:   3'- -CGuu--CGCGcaCCACCGGgaCCGGGuG- -5'
19067 5' -61.9 NC_004684.1 + 31114 0.71 0.186141
Target:  5'- cGCAGGCGC-UGGaggaccuUGGCgaCCUGGCgCACa -3'
miRNA:   3'- -CGUUCGCGcACC-------ACCG--GGACCGgGUG- -5'
19067 5' -61.9 NC_004684.1 + 2831 0.71 0.18662
Target:  5'- cGCGGGUGgGUGGaUGaGCaCCUGGaCCACg -3'
miRNA:   3'- -CGUUCGCgCACC-AC-CG-GGACCgGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.