miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19067 5' -61.9 NC_004684.1 + 1625 0.67 0.368192
Target:  5'- cGCGcccaccGGCGCGcGGcGGCCaacGCCCGCg -3'
miRNA:   3'- -CGU------UCGCGCaCCaCCGGgacCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 2144 0.69 0.254892
Target:  5'- uGCGuucGGCGCGUcGGUgaacucggcguugacGGUCaUGGCCCGCg -3'
miRNA:   3'- -CGU---UCGCGCA-CCA---------------CCGGgACCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 2831 0.71 0.18662
Target:  5'- cGCGGGUGgGUGGaUGaGCaCCUGGaCCACg -3'
miRNA:   3'- -CGUUCGCgCACC-AC-CG-GGACCgGGUG- -5'
19067 5' -61.9 NC_004684.1 + 3905 0.66 0.411143
Target:  5'- cGCAGGCGCagcUGGaGGCCUcGcGCCCcCg -3'
miRNA:   3'- -CGUUCGCGc--ACCaCCGGGaC-CGGGuG- -5'
19067 5' -61.9 NC_004684.1 + 4094 0.67 0.351895
Target:  5'- aGCucucGCGCGUGGUGcagggauacGCCCggcGGCuCCAg -3'
miRNA:   3'- -CGuu--CGCGCACCAC---------CGGGa--CCG-GGUg -5'
19067 5' -61.9 NC_004684.1 + 4457 0.68 0.284328
Target:  5'- cGCGccGCGCGcUGGUcggcuucgucaccGGCcagggCCUGGCCCGCc -3'
miRNA:   3'- -CGUu-CGCGC-ACCA-------------CCG-----GGACCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 5409 0.74 0.122656
Target:  5'- gGCGGGUGCG-GGUGGCUCaUGGUgUACa -3'
miRNA:   3'- -CGUUCGCGCaCCACCGGG-ACCGgGUG- -5'
19067 5' -61.9 NC_004684.1 + 5458 0.7 0.234347
Target:  5'- cCAGGCccgGCG-GGU-GCCgUGGCCCGCa -3'
miRNA:   3'- cGUUCG---CGCaCCAcCGGgACCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 7229 0.68 0.285012
Target:  5'- -gGAGCGCGUggaGGUGuGCCC-GGUgCACc -3'
miRNA:   3'- cgUUCGCGCA---CCAC-CGGGaCCGgGUG- -5'
19067 5' -61.9 NC_004684.1 + 7295 0.67 0.359979
Target:  5'- -gGAGaacuuCGgGGUGGCCCggugaaGGCCCGCa -3'
miRNA:   3'- cgUUCgc---GCaCCACCGGGa-----CCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 7880 0.67 0.366539
Target:  5'- cGCAGGCcuacgacGCGcccggugcuccguUGG-GGCCgCUGGCCgCGCa -3'
miRNA:   3'- -CGUUCG-------CGC-------------ACCaCCGG-GACCGG-GUG- -5'
19067 5' -61.9 NC_004684.1 + 9208 0.68 0.298959
Target:  5'- aGUggGCGCGUgaccgGGUGGgCCaGGaCCCGa -3'
miRNA:   3'- -CGuuCGCGCA-----CCACCgGGaCC-GGGUg -5'
19067 5' -61.9 NC_004684.1 + 9587 0.71 0.196426
Target:  5'- cCAGGC-CGUGGUcggguucccaGGUCUUGGCCCAg -3'
miRNA:   3'- cGUUCGcGCACCA----------CCGGGACCGGGUg -5'
19067 5' -61.9 NC_004684.1 + 10208 0.66 0.384999
Target:  5'- aGCGAGCGCuggaGGUGccuGCCCaGGUgCGCg -3'
miRNA:   3'- -CGUUCGCGca--CCAC---CGGGaCCGgGUG- -5'
19067 5' -61.9 NC_004684.1 + 10248 0.68 0.298959
Target:  5'- gGCcguGCGCGUGGagcgGGCCaaccaaCUGGCCaGCg -3'
miRNA:   3'- -CGuu-CGCGCACCa---CCGG------GACCGGgUG- -5'
19067 5' -61.9 NC_004684.1 + 10347 0.69 0.258668
Target:  5'- ---cGCGC-UGGU-GCCgUGGCCCACc -3'
miRNA:   3'- cguuCGCGcACCAcCGGgACCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 11521 0.66 0.4201
Target:  5'- gGCAc-CGCucGGUGGgCCUGGgCCACa -3'
miRNA:   3'- -CGUucGCGcaCCACCgGGACCgGGUG- -5'
19067 5' -61.9 NC_004684.1 + 11760 0.71 0.206679
Target:  5'- gGCAucuGGUucuccgGUGUGGUGGCCCcgugGGCCgACc -3'
miRNA:   3'- -CGU---UCG------CGCACCACCGGGa---CCGGgUG- -5'
19067 5' -61.9 NC_004684.1 + 12075 0.73 0.14767
Target:  5'- cCGAGCGCGacGaGGUgCUGGCCCGCg -3'
miRNA:   3'- cGUUCGCGCacCaCCGgGACCGGGUG- -5'
19067 5' -61.9 NC_004684.1 + 13267 0.74 0.113187
Target:  5'- cGCcAGCGCGcUGGUGGCCgccgguggCUGGUgCGCg -3'
miRNA:   3'- -CGuUCGCGC-ACCACCGG--------GACCGgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.